Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00419 ATGGCTCTGGAAGCTCTTCAATCACCCAGAACTGCCACTCCATCGTTTAGTCCCTTTGAAGAAACCAACCTCAGTTACTTGGAGACACCGTGGACCAAAGGAAAGCGTTCTAAGCGTAGCCGCATGGAGCAGCAACTGCAACACTCTTCATGCACCGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCACGGCGGCGCCGGCGGTGTCCCCGCCGCCAAGCCTGCTGTCTCCGACAACAATTCCGCGCCGCTACCCGCCGCCAAACTGAGCTACAAATGTTCGGTCTGCAACAAAGCCTTCTCCTCTTACCAAGCACTCGGTGGACACAAGGCCAGCCACCGGAAGCTCGGCGGCGAGCACCACTCGACCTCCTCCGCCGTGACAACGAGTTCGGCGTCGAACGGCGGTGCTAGGACCCACGAGTGCTCCATCTGCCAAAAGACGTTCCCAACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGTAACAGCGCCGTAACCGCCTCTGAGGGAGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTGAACCTCCCGGCTTTTCCGGACTTTTCAACAAGGTTCTTCGTTGATGACGAGGTTACCAGTCCTCATCCATCCAAGAAATCCCGTCTCAATTTGACCATACCCAAGATTGAAATCCCTCAATACTGA 702 0.5627 MALEALQSPRTATPSFSPFEETNLSYLETPWTKGKRSKRSRMEQQLQHSSCTEEEYLALCLIMLAHGGAGGVPAAKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGGHKASHRKLGGEHHSTSSAVTTSSASNGGARTHECSICQKTFPTGQALGGHKRCHYEGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFSTRFFVDDEVTSPHPSKKSRLNLTIPKIEIPQY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00419 233 MobiDBLite consensus disorder prediction 114 140 - -
Gma04g00419 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Gma04g00419 233 MobiDBLite consensus disorder prediction 124 140 - -
Gma04g00419 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
Gma04g00419 233 Pfam C2H2-type zinc finger 143 166 - -
Gma04g00419 233 Pfam C2H2-type zinc finger 94 118 - -
Gma04g00419 233 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Gma04g00419 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Gma04g00419 233 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gma04g00419 233 SUPERFAMILY beta-beta-alpha zinc fingers 94 165 IPR036236 -
Gma04g00419 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Gma04g00419 233 SMART c2h2final6 143 165 IPR013087 -
Gma04g00419 233 SMART c2h2final6 94 116 IPR013087 -
Gma04g00419 233 Gene3D Classic Zinc Finger 92 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00419 Gma-Chr4 3637757 3639928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00419 1 225 C2H2 Transcription Factor Family AT1G27730 54.167 5.36e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma04g00419 zf-C2H2_6 5.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00419 - - gmx:100800095 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00419 04 3637757 3639928 Gma04g00419 04 3637757 3639928 ECH
Gma04g00419 04 3637757 3639928 Gma06g00408 06 3516597 3517864 GST
Gma17g02264 17 40519119 40520278 Gma04g00419 04 3637757 3639928 PCT
Gma14g00773 14 7946425 7947160 Gma04g00419 04 3637757 3639928 PCT
Gma04g00419 04 3637757 3639928 Gma17g02264 17 40519119 40520278 PCT
Gma04g00419 04 3637757 3639928 Gma14g00773 14 7946425 7947160 PCT