Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01693 ATGGCATCCTCAACTCAATTCTCCACCACTCTTGTTACACTATGTCTCTTCCAATTCCTAGCAGGTTCGTATTCAACGACATTCACGATTGTGAACAAGTGCAGCTACACAGTTTGGCCCGGCATTTTATCCGGCGCCGGAACCTCGCCGCTCCCCACCACCGGCTTCGTCTTACAACCAGGCGAGTCCAACGTGATCGCCGTGCCGGCCGCCTGGTCCGGCCGCCTCTGGGGGCGGACCTTCTGCACCCAAGATGCCACAGGAAAATTCTCCTGCGTCACCGGCGACTGCGGCTCCTCCGCCGTGGAATGCAACGGCGGAGGAGCCGCCCCGCCGGCCACGCTGGCGGAATTCACCCTGAACGGCGCCGGCGGGCTGGATTTCTTCGATGTGAGCCTCGTGGACGGTTACAACCTCCCCATGATCGTGGAGCCACAGGGCGGAACCGGCGCCGGAAACTGCACCGCCACGGGGTGCGTGGTGGATTTAAACACGCCGTGCCCGGCGGAGCTGATGGTGATGAGCAGCGGAGAGGGCGTGGCGTGCAAAAGCGCGTGCGAAGCTTTCGACGATCCACAGTACTGCTGTAGTGGCGCTTACGCGACGCCTGACACATGCAAACCCAGTTCATACTCGCAGTTCTTTAAGAGCGCGTGCCCACGCGCTTATAGTTACGCTTATGACGATGGCTCCAGCACCTTCACTTGCGCCACAGCGGATTATACCATCACTTTCTGCCCACAACCATCCACTAGTTCGATTAAATCGGGAAATGGGAAATACCCAATGGCGGTGGACAATTCGGGTGCTAATGTAGACGTAAGAACAAACAATGTTATGGCGGTGATTGCTTCTGTTTTGGTGGCATTTGTGGCAACTCAATTAGGTGTCCCTTCACTGCCAAAGTTGCATTAA 915 0.5705 MASSTQFSTTLVTLCLFQFLAGSYSTTFTIVNKCSYTVWPGILSGAGTSPLPTTGFVLQPGESNVIAVPAAWSGRLWGRTFCTQDATGKFSCVTGDCGSSAVECNGGGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMIVEPQGGTGAGNCTATGCVVDLNTPCPAELMVMSSGEGVACKSACEAFDDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGSSTFTCATADYTITFCPQPSTSSIKSGNGKYPMAVDNSGANVDVRTNNVMAVIASVLVAFVATQLGVPSLPKLH 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01693 304 PANTHER OS03G0233200 PROTEIN 10 267 IPR001938 -
Gma01g01693 304 SMART tha2 28 247 IPR001938 -
Gma01g01693 304 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 267 - -
Gma01g01693 304 Pfam Thaumatin family 32 247 IPR001938 -
Gma01g01693 304 ProSiteProfiles Thaumatin family profile. 25 247 IPR001938 -
Gma01g01693 304 CDD TLP-PA 27 246 - -
Gma01g01693 304 Gene3D Thaumatin 26 247 IPR037176 -
Gma01g01693 304 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Gma01g01693 304 PIRSF PR5 1 297 IPR001938 -
Gma01g01693 304 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Gma01g01693 304 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Gma01g01693 304 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Gma01g01693 304 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01693 Gma-Chr1 52588415 52590569 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01693 7 252 Receptor kinase-like Gene Family AT5G38280 52.191 1.47e-87 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01693 - - gmx:100807106 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00706 11 5938666 5940744 Gma01g01693 01 52588415 52590569 ECH
Gma16g01184 16 29370996 29373411 Gma01g01693 01 52588415 52590569 ECH
Gma17g02468 17 42718696 42722641 Gma01g01693 01 52588415 52590569 ECH
Gma01g01693 01 52588415 52590569 Gma01g01693 01 52588415 52590569 ECH
Gma12g00294 12 2346936 2350185 Gma01g01693 01 52588415 52590569 ECH