Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2005 ATGGGTAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGACCTTGGTCGCCAGAAGAAGATGCCAAACTCAAATCATACATCGAACAGCAAGGCACCGGTGGTAACTGGATTGCTTTGCCCCAAAAGATCGGTCTTAAGCGATGTGGCAAGAGTTGCCGTCTTAGGTGGCTAAACTATCTTCGCCCTAATATCAAGCACGGTGGCTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTTTACGTTAGTATTGGAAGCAGGTGGTCCGTGATTGCAGCTCAATTGCCCGGAAGAACTGATAACGACATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTTCTTGGGAAGCACCGCAAAGAACAACAACAAGCACGTAATAATAGAGGCAACGGTGTTGCTAAGCAAGGAAGCAATAATAATGGAGGGTCGAGTAATGGGGATTCCTCATCCTTATTGGTTCCCCAAAATAGTACTCAACAGCCGTACTGGCCAGTACACATGCCTGTGCTACCACCGGTTCAATACACAAATCAATTATTAGGACCGAGTTTCAACGACCAAGACTCCATTAGGAAACTGCTCATCAAGCTTGGTGGTAGATTCTCCGATGATTATCAACCTACGCTTCATGGGGCAGTGAATCTTGATCATCAATTCCCAAATGGTCCTTCATCCACTCAACAAGTTTATGAAGAACAAGTCCATATTGGCTCATCTAGTTGCCCAGACTCTATTAGCAACAACAACTTGGTACAATTCTCACAGACTAATAATCAGTACTGTTCTGAGGGGCAAGCAGGACTTGAATTGGTGCAAGGACAAGCTGGCAATTTCACCGCAGCAATTGGGGAAATGGTAGCTGCTGCTAATTATCCAGATGGGATGGAGTTTTTCTATGGGGAGGACATGATCACCGATAATAAGATAATAGGCACCAGTTCTTCTTGTAGCCAAGGTACTAACTGGGGTGAGACCAGCACAGTGATTTATCCTCCTCTTGTTGCATCGAATTACCGGGAAGCGACCCCACAAGAATGTGTTTTCCAAGAGTACTATCCCGGGCAGCAATAG 1083 0.4561 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQQGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQQARNNRGNGVAKQGSNNNGGSSNGDSSSLLVPQNSTQQPYWPVHMPVLPPVQYTNQLLGPSFNDQDSIRKLLIKLGGRFSDDYQPTLHGAVNLDHQFPNGPSSTQQVYEEQVHIGSSSCPDSISNNNLVQFSQTNNQYCSEGQAGLELVQGQAGNFTAAIGEMVAAANYPDGMEFFYGEDMITDNKIIGTSSSCSQGTNWGETSTVIYPPLVASNYREATPQECVFQEYYPGQQ* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2005 360 CDD SANT 71 113 IPR001005 -
Dod09g2005 360 Gene3D - 7 68 - -
Dod09g2005 360 Gene3D - 70 140 - -
Dod09g2005 360 MobiDBLite consensus disorder prediction 119 162 - -
Dod09g2005 360 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod09g2005 360 CDD SANT 16 62 IPR001005 -
Dod09g2005 360 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 343 - -
Dod09g2005 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod09g2005 360 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod09g2005 360 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dod09g2005 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod09g2005 360 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod09g2005 360 MobiDBLite consensus disorder prediction 129 162 - -
Dod09g2005 360 PANTHER OS09G0431300 PROTEIN 1 343 - -
Dod09g2005 360 SMART sant 13 64 IPR001005 -
Dod09g2005 360 SMART sant 67 115 IPR001005 -
Dod09g2005 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2005 Dod-Chr9 41548670 41550365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2005 1 302 MYB Transcription Factor Family AT3G49690 49.051 7.67e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g2005 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2005 K09422 - gmx:778079 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1966 08 46655185 46657131 Dod09g2005 09 41548670 41550365 PCT