Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1978 ATGGATCTTGGTGTGGTTGGTTTTGATGGGTTGGTGGGTTCACAAACTGGGTTTGATGTTAATCCTCTTTCTTCTGATCCTGAGACAAAGCATAAGTGGCATGGATCTGGGTTCCTTAAGCAAGAGAGATCTGAAGATGAGTCATGGAAGGGGTCCAAAATGGCAAAGATTGATGACACATCAAAGGCAATGATGCTTCTGGGGCAGAGGAATAATAACAACTCTTTGTTATTGATATCAAACAATAATAATAATAATAATCATGGTGGTGGTGGTGCTGGTGCCACTACTCTCTTTGATGGCCAGCAGCACCAGCAACAAATGCTGAGCTTCTCAACACCAAAGGCAGAGCCTTTTTTGGTGGACAAGGCCTCCCCAAATGCCACATTGCCTTATTCTTTCCACCCTTTGTCTGGTTACAGCAGGAATGCAGTTTATGGTTCGGGAAACATGCATGGGGCTATAAGAGGGCCATTCACTCCTTCACAGTGGATGCAGCTGGAACACCAAGCATTGATCTACAAGTACATCACAGCAAATGTGCCAGTGCCCTCTCATTTGCTTATGCCCATCAGAAAAGCCCTTGATTCTGCCGCCTTCTGCAGCTTCTCAACCGGACTTCTTAGACCCAATGCATTGGGATGGGGAACGTTCCATCTGGGATTCTCGAACAACACCGATCCAGAGCCAGGAAGGTGCAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTTGTGGACCAGAAGTACTGTGAGCGCCACATGAACAGAGGCCGCCACCGTTCAAGAAAGCCTGTGGAAGGCCGGAATGGCCATGCACTCACCACTTCTAACACAAACACAAACACAAACACCAACACCAACACCAACAACAACAATTCTTCTTCAAAGCTCTTGTTGCCTAATAATGGTAGTAGCAATAATAATAATAATGGCAACCACATTAATGGTTCTCCCCCTTCATCATCATTCTCTATTGTGGGGCTAGGGAGCGGTGCATCCAGCAATATCATTACCTTTGGACACAGCCAGGAACTTAAGAATATGCACCAGCAGCAACAGCAGTCTCTTGCACCTGATGCTTCTGCTGCCAACGGCATCAACAGGATTTTTATGAATAATAACAAAGAGAGCAATGCAAGTGAGAGAAGAATTATGCAAGATGGTCCTGCACTTCCAATGCTGCCTCCTACCCTTGAGTTGAAACCAAAGGAAAACCCCTTCATGATTCATCATAAGCATCAAATCCCATATGAAGAGTCCTCAAGGATTAACAATGAGTTTGGCCTTGTCACTTCTGATTCCCTACTCAACCCTTCCCATAAAAGCACCACATTGCTCACTAGCACAAGAACCTTTGCCCCTTCACATAATAGCCCCGATAACAAAGCTGAGTCACAGGATTCCCTAAGGAACTTCATTGATGACTGCCCCAAAATGCAATCAGATAGGACACAGCTGTCAATTTCCATCCCAATGGCTTCATCAGAATTCATGCCATTTACTTCCTCACCAACCAATGAAAAGCTCACACTTTCACCATTAAGGCTATCAAGGGAATTAGACCCCATCCAAATGGGGTTGGGTGTGGGAAGTGGTGGTGTCAAGGAATCCAACAGCACTACTAGGCAAGCCAGTTGGATTCCAATTACTTGGGAGAGCTCAATGTGTGGTCCACTTGGAGAGGTTCTTAATCTTAGCAACAACAACAATAACAATAATAGTGCTAATGATCAATGTGCTAATACTAACAAGAACTCTTCTTCAGGTCTCAACCTTATGAGTGATGGTTGGGACAATAGCCCTTCAATAGGGTCATCCCCAACTGGGGTATTGCAGAAGACATCATTTGGATCACTTTCTAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAAAACAACAAGGCTTGTCAAGAAGGCGCTAGCTTGTGCAATGACCTTCTTGGATCATCAACTCTTGGGAATGCTTCTTCCTCCTTACCTGCCTTGTAA 2001 0.4538 MDLGVVGFDGLVGSQTGFDVNPLSSDPETKHKWHGSGFLKQERSEDESWKGSKMAKIDDTSKAMMLLGQRNNNNSLLLISNNNNNNNHGGGGAGATTLFDGQQHQQQMLSFSTPKAEPFLVDKASPNATLPYSFHPLSGYSRNAVYGSGNMHGAIRGPFTPSQWMQLEHQALIYKYITANVPVPSHLLMPIRKALDSAAFCSFSTGLLRPNALGWGTFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGRNGHALTTSNTNTNTNTNTNTNNNNSSSKLLLPNNGSSNNNNNGNHINGSPPSSSFSIVGLGSGASSNIITFGHSQELKNMHQQQQQSLAPDASAANGINRIFMNNNKESNASERRIMQDGPALPMLPPTLELKPKENPFMIHHKHQIPYEESSRINNEFGLVTSDSLLNPSHKSTTLLTSTRTFAPSHNSPDNKAESQDSLRNFIDDCPKMQSDRTQLSISIPMASSEFMPFTSSPTNEKLTLSPLRLSRELDPIQMGLGVGSGGVKESNSTTRQASWIPITWESSMCGPLGEVLNLSNNNNNNNSANDQCANTNKNSSSGLNLMSDGWDNSPSIGSSPTGVLQKTSFGSLSNSSAGSSPRAENNKACQEGASLCNDLLGSSTLGNASSSLPAL* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1978 666 ProSiteProfiles QLQ domain profile. 158 193 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dod08g1978 666 MobiDBLite consensus disorder prediction 578 639 - -
Dod08g1978 666 Pfam QLQ 158 192 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dod08g1978 666 MobiDBLite consensus disorder prediction 254 322 - -
Dod08g1978 666 Pfam WRC 228 270 IPR014977 -
Dod08g1978 666 PANTHER - 25 641 IPR031137 GO:0005634|GO:0006351|GO:0032502
Dod08g1978 666 PANTHER GROWTH-REGULATING FACTOR 9 25 641 - -
Dod08g1978 666 MobiDBLite consensus disorder prediction 25 47 - -
Dod08g1978 666 ProSiteProfiles WRC domain profile. 227 271 IPR014977 -
Dod08g1978 666 MobiDBLite consensus disorder prediction 19 47 - -
Dod08g1978 666 MobiDBLite consensus disorder prediction 274 322 - -
Dod08g1978 666 SMART QLQ_2 157 193 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1978 Dod-Chr8 46888760 46894682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1978 365 666 GRF Transcription Factor Family AT2G22840 37.261 1.56e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Dod08g1978 WRC 6.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1978 - - cam:101496763 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1978 08 46888760 46894682 Dod08g1978 08 46888760 46894682 ECH