Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1976 ATGAAGTCCTTATTGAATGATGGTAACGCTGATGATGGGAACAATCATAACTGGTTGGGATTCTCTCTCTCACCCCACATGAAAATGGAGGTTGTTACTTCTTCTTCTTCTGGCCACAATCATGATCATCATCACTACTATCATCATCATCATCAGCCACAACATCCTTCTTCTGCTGCAGCTTCTTCCAGCACTGCCTCCTCCACCTCCACAAACTTCTATTTGTCACCTTCACAACTAAATGCCTCAGGAATCTGTTATGGTGTAGGTGAAAACAGTGCCTTTCATCATTCTCCTTTGGCCATGATGCCACTCAAGTCTGATGGCTCACTTTGCATAATGGAAGCTCTCACCAGATCACAAACCCAAGTGATGGTGCCAAGTTCTTCTCCAAAACTGGAGGACTTCCTAGGTGGTGCAACTATGGGAGCACATGAATATGGTGGCAATGAAAGAGAGGCAATGGCTTTAAGCTTAGACAGCATATACTATAGCCAAAATGCTGAGCCTCAAACCAACAGAGAACATTCTTCTTCTCTGGACCTTCTTCTCTCTGACCCTTTCAGGCAACAAGGCCATCAACATGTCAATGCATACTATTCAGGACTTGCTTGCAATGATGGAATATTTCAAGCATCATTAGGGGAAGAAGATACCAAAGAACCCCCCCACCATGTCACAGTTTGCGGCAGCTCCCAAATGCCACAAGTGGAAGAAGAAGGCATTGCTTGCTTCAAAAACTGGGTGGCCCCAAGAGAGTATTCTTCTTCTGCTGTTGCTGCTGCTCAGCAAAGTCTAGAGCAGCATGTGAATGGTGGTAATAATATCAATGGAGATGCTGTTCATTGTGCTTCTGTGTCTGTTGGTGTTGGAACTATAAGTGGTTGTGGGGATTTACAGTCCTTAAGCTTGTCCATGAGTCCTGGTTCTCAATCAAGCTGTGTCACTGTTCCAACTCAGATCTCACCTTCTTGTAAAGACTCAGTGGCCATTGAAGCCAAGAAGAGAGGGCCTGCTAAGCTTGGCCAGAAGCAAACTGTGCATAGGAAATCCATTGACACATTTGGCCAGAGAACTTCACAGTATAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAAACTAGGAAAGGAAGACAAGGTGGCTATGATATGGAAGAGAAAGCTGCAAGGGCGTATGATCTTGCAGCTCTTAAGTATTGGGGGCCTTCAACACATATAAACTTCCCGCTAGAAAATTACCAAAAAGAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAGTACGTTGCCCACTTGAGAAGAAAGAGCAGTGGATTTTCAAGGGGTGCTTCAATGTATAGAGGGGTGACAAGGCACCATCAACATGGCAGATGGCAAGCAAGGATAGGCAGAGTGGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTTCGTGGGGTGAATGCAGTCACAAACTTTGACATATCAAGATATGATGTTGAAAGGATCATGGCTAGCAATACCCTTCTTGCTGGAGATGTTGCCAGAAGAAACAACAAGAATAGTGAACCAAGAACCGAGGCAATAGAGTACAATGTTGCAACAAGCAGCCAAATCATCAATAGGGAAGAAGTTGAAGCTGTAAACAACAACAATGAAAATGGTTCAGATAATTGGAAGGTGGCTTTGTATCATCAGTCCAATAACTCTGACCAGAAGACCATAAACTGTGGAAATTATAGAAATTCTGGTTTCTCTGGGGCCCTACATGATCTCATTGGGATTGATTCAGTAGGATCTAGCCACACTATGCTAGATGACTCTAACAAGCTAGGTACTCATTTTTCAAACACATCCTCGCTGGTGACAAGTTTAAGCAGCTCAAGAGAAGGTAGCCCTGATAAAACGGGTCCCACATTGCTCTTTCAGAAGCATCCAATGGTGCCAAGGATGGTTAATAGCACCATTGCTACTGGTGTTAGCTCTTGGTTCCCTTCAATCAGGCCTACACCTGCTGCTATCTCAATGTCTCACATGCCAGTTTTTGCGGCTTGGAATGATCTCTAG 2139 0.4423 MKSLLNDGNADDGNNHNWLGFSLSPHMKMEVVTSSSSGHNHDHHHYYHHHHQPQHPSSAAASSSTASSTSTNFYLSPSQLNASGICYGVGENSAFHHSPLAMMPLKSDGSLCIMEALTRSQTQVMVPSSSPKLEDFLGGATMGAHEYGGNEREAMALSLDSIYYSQNAEPQTNREHSSSLDLLLSDPFRQQGHQHVNAYYSGLACNDGIFQASLGEEDTKEPPHHVTVCGSSQMPQVEEEGIACFKNWVAPREYSSSAVAAAQQSLEQHVNGGNNINGDAVHCASVSVGVGTISGCGDLQSLSLSMSPGSQSSCVTVPTQISPSCKDSVAIEAKKRGPAKLGQKQTVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGDVARRNNKNSEPRTEAIEYNVATSSQIINREEVEAVNNNNENGSDNWKVALYHQSNNSDQKTINCGNYRNSGFSGALHDLIGIDSVGSSHTMLDDSNKLGTHFSNTSSLVTSLSSSREGSPDKTGPTLLFQKHPMVPRMVNSTIATGVSSWFPSIRPTPAAISMSHMPVFAAWNDL* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1976 712 MobiDBLite consensus disorder prediction 32 65 - -
Dod08g1976 712 SUPERFAMILY DNA-binding domain 360 426 IPR016177 GO:0003677
Dod08g1976 712 Pfam AP2 domain 461 510 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 Pfam AP2 domain 361 416 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 SMART rav1_2 460 524 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 SMART rav1_2 361 430 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 ProSiteProfiles AP2/ERF domain profile. 460 518 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 Coils Coil 425 445 - -
Dod08g1976 712 ProSiteProfiles AP2/ERF domain profile. 361 424 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 SUPERFAMILY DNA-binding domain 459 520 IPR016177 GO:0003677
Dod08g1976 712 Gene3D AP2/ERF domain 360 426 IPR036955 GO:0003700|GO:0006355
Dod08g1976 712 Gene3D AP2/ERF domain 460 520 IPR036955 GO:0003700|GO:0006355
Dod08g1976 712 CDD AP2 459 520 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 CDD AP2 360 424 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 710 - -
Dod08g1976 712 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 710 - -
Dod08g1976 712 PRINTS Ethylene responsive element binding protein signature 362 373 IPR001471 GO:0003700|GO:0006355
Dod08g1976 712 PRINTS Ethylene responsive element binding protein signature 500 520 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1976 Dod-Chr8 46819977 46824881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1976 281 550 AP2-EREBP Transcription Factor Family AT4G37750 71.242 1.00e-138 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Dod08g1976 AP2 5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1976 K09285 - gmx:100798179 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1976 08 46819977 46824881 Dod08g1976 08 46819977 46824881 ECH
Dod08g1976 08 46819977 46824881 Dod09g2014 09 41668762 41670919 PCT