Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1975 ATGGCTATTAGTTCTGTGTCCATGGCTAAGCCTTCAGATTCACCTAACCCTTTCCTCGTTGCTTCTTCTGCTTGGGATCCACTTGTTTCCTTGAGCCAGGCTCAAACCTTTGGAGGCTCCTCAATGGTTTCTCATAGTGAGATTGGCAATTCTTCTTACCCTCTTGTAATGGAGAATCAAGGAATTAGCAGCACCACTCACCTTGTTCAGTATATGTCTGACGCAAATCTTGAGGGCATGGTCCCAAAAGTTCCCTCCTATGGAAGTGGCAGCTTCTCAGAAATGGTTGGCCCCTTTGGCCAAATGGGGTCTGGTGATATAGCTAACATGGGGTATAGACCAAGCTATAATCACATCAAGGATGCTGGAACAGAAAGAGCTTCAATAAATGAACAATCTCAGGTTGATGATTCAGCTACTGAAGAGGGTGCCCCAGGATCTGCACCTAGTGGAAATAGAAGAAAGCGTGTGCTTGATCATGATCCTGCTTTCAGTCCAAACAAGAATTCTGAGGGTGATGGGATGAAAGATTCTCCTAGGAAGAGCTCTGATGGTGGTAAAGAACATGAAAAGAAGGCCAAAGTTGAGCAGAATACAAGTGCAGATTTGCGCGGTAAGCAACCGGCAAAGCAAGCTAAAGACAATTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGAGCTAGGAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGAGAATGAGATTGCTACAAGAACTTGTTCCAGGGTGCAACAAGATAACTGGCAAAGCAGTAATGCTTGATGAGATTATAAACTATGTGCAATCTCTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAATTGTGACGTGGAGCGGATCCTATCCAAGGATATTCTCCAGTCGCGCATAGGACACGGAATTGGCGGATATGGTCCTAGTATCAGCTCCTCTCACCCATTCCCCAATGGAAGTTTCCTGGGAACCGTGGCTGGCATCCCTGGTACATCAACACAATTCCCTCCTTTGCCTCAGGCTGTTTTGGACCATGAGTTCCAAAGCCTCTATGGAATAGGGTATGATTCTAGTACAGCACTTGACAATTTGGGACCAAATGGTAATAGGCAGAGACCCTTTTTGTTTGAAAATTTGTCTGTATTCATTTCCCGTTTTCAGTTTTAA 1230 0.4472 MAISSVSMAKPSDSPNPFLVASSAWDPLVSLSQAQTFGGSSMVSHSEIGNSSYPLVMENQGISSTTHLVQYMSDANLEGMVPKVPSYGSGSFSEMVGPFGQMGSGDIANMGYRPSYNHIKDAGTERASINEQSQVDDSATEEGAPGSAPSGNRRKRVLDHDPAFSPNKNSEGDGMKDSPRKSSDGGKEHEKKAKVEQNTSADLRGKQPAKQAKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNCDVERILSKDILQSRIGHGIGGYGPSISSSHPFPNGSFLGTVAGIPGTSTQFPPLPQAVLDHEFQSLYGIGYDSSTALDNLGPNGNRQRPFLFENLSVFISRFQF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1975 409 CDD bHLH_AtBPE_like 225 310 - -
Dod08g1975 409 SMART finulus 241 291 IPR011598 GO:0046983
Dod08g1975 409 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 391 IPR024097 GO:0006355
Dod08g1975 409 Gene3D - 232 307 IPR036638 GO:0046983
Dod08g1975 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 302 IPR036638 GO:0046983
Dod08g1975 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983
Dod08g1975 409 MobiDBLite consensus disorder prediction 200 222 - -
Dod08g1975 409 MobiDBLite consensus disorder prediction 127 222 - -
Dod08g1975 409 Pfam Helix-loop-helix DNA-binding domain 238 286 IPR011598 GO:0046983
Dod08g1975 409 MobiDBLite consensus disorder prediction 173 199 - -
Dod08g1975 409 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1975 Dod-Chr8 46791884 46794666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1975 1 396 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.250 3.07e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g1975 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1975 - - gmx:100794464 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1975 08 46791884 46794666 Dod08g1975 08 46791884 46794666 ECH