Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1971 ATGGCAGATCCGTACGTCCTCGCTTGGATCCTGTGCTCCGTTCTCAGCCTCTTCGCGCTCTACAGCCTCGCCTTCGCCGGAGGAAATATCGGCCTTCGCGCTTCTCCGGAGAACGAGGTCCGTCGATCGGAGAACGTGACCACCGCCGCAGGAGAATGCGGATCGGAGAACCGAAATGGCGACGGCGCCGCTGACGTCATCATCGTCGGAGCTGGCGTCGCTGGCTCCGCTCTGGCTCACACTCTCGGCAAGGATGGACGACGAGTGCATGTAATTGAAAGAGATCTGAGTGAGCCCGACCGCATTGTTGGAGAGCTGCTACAACCTGGGGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTGGAGGAAATTGATTCCCAGCGAGTGTTTGGTTATGCGCTTTTCAAGGATGGGAAAAACACACGTCTCTCTTATCCCTTGGAGAAGTTTCACTCGGATATCTCTGGCAGAAGCTTCCACAATGGGCGTTTCATTCAGAGGATGCGGGAGAAGGCTGCTACCCTTCCCAATGTACGATTGGAGCAAGGAACAGTCACATCCCTACTGGAAGACAAGGGAACAATTAAAGGCGTGCAATACAAGACTAAAGGCGGCCAAGAATTGAAAGCTTATGCTCCTCTTACTATCGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGTTCTCTTTGTAACCCTAAGGTAGACATTCCCTCTTGTTTTGTCGGCTTAGTTTTGGAGAACTGTGAACTTCCATATGCAAATCATGGCCACGTCATTCTGGGAGATCCTTCGCCAGTTCTATTCTATCCGATAAGCAGTACAGAGGTTCGCTGTCTGGTTGATGTGCCTGGTCAGAAGGTTCCTTCTATTTCAAGCGGTGAAATGGAAAACTATTTGAAGACAGTGGTGGCTCCACAGATCCCCCCTGAGCTTTATGATGCCTTCATAGCTGCAGTGGACAAAGGCAGCATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACACCTGGCGCCCTTCTCATGGGAGATGCATTCAACATGAGGCATCCTCTAACAGGGGGCGGAATGACCGTGGCATTGTCTGATATTGTGGTGCTGAGAAACCTTCTCAGACCCTTGCGTGACCTGAATGATGCACCCACACTTTGCAAATACCTTGAATCCTTTTACACCTTGCGTAAGCCTGTGGCATCCACCATAAATACATTAGCAGGAGCCCTTTACAAGGTCTTTTGTTCATCCCCTGATCAGGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCTTAGGAGGCCTATTCTCCCAAGGACCAGTCTCTCTACTCTCAGGATTAAACCCTCGTCCTTTGAGCTTGGTTCTTCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTAATATTTCCTTTCCCTTCACCTACGAGGCTATGGATTGGAGCTCGATTAATCTCTAGTGCATCTGGAATCATCTTGCCCATAATCAAAGCAGAAGGGGTTCGTCAGATGTTTTTCCCTGCAACTGTTCCAGCTTATTACAGAGCTCCTCCGGCTGCACGATAG 1590 0.4956 MADPYVLAWILCSVLSLFALYSLAFAGGNIGLRASPENEVRRSENVTTAAGECGSENRNGDGAADVIIVGAGVAGSALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEEIDSQRVFGYALFKDGKNTRLSYPLEKFHSDISGRSFHNGRFIQRMREKAATLPNVRLEQGTVTSLLEDKGTIKGVQYKTKGGQELKAYAPLTIVCDGCFSNLRRSLCNPKVDIPSCFVGLVLENCELPYANHGHVILGDPSPVLFYPISSTEVRCLVDVPGQKVPSISSGEMENYLKTVVAPQIPPELYDAFIAAVDKGSIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCSSPDQARKEMRQACFDYLSLGGLFSQGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLIFPFPSPTRLWIGARLISSASGIILPIIKAEGVRQMFFPATVPAYYRAPPAAR* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1971 529 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 528 - -
Dod08g1971 529 Pfam NAD(P)-binding Rossmann-like domain 68 94 - -
Dod08g1971 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 - -
Dod08g1971 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 - -
Dod08g1971 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 65 87 - -
Dod08g1971 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 214 229 - -
Dod08g1971 529 Pfam Squalene epoxidase 215 487 IPR013698 GO:0004506|GO:0016021|GO:0050660
Dod08g1971 529 Gene3D - 56 439 IPR036188 -
Dod08g1971 529 SUPERFAMILY FAD/NAD(P)-binding domain 65 439 IPR036188 -
Dod08g1971 529 PANTHER SQUALENE MONOOXYGENASE 1 528 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1971 Dod-Chr8 46722287 46727063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1971 44 526 Miscellaneous Gene Families AT1G58440 80.952 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1971 K00511 - gmx:100804406 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1971 08 46722287 46727063 Dod08g1971 08 46722287 46727063 ECH
Dod08g1971 08 46722287 46727063 Dod09g2010 09 41622010 41626849 PCT