Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1966 ATGGGAAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGCCCTTGGTCTCCAGAAGAAGATGCTAAACTCAAGTCCTACATAGAACAACATGGCACAGGTGGCAACTGGATTGCTTTGCCACAAAAAATTGGCTTGAAGCGTTGTGGCAAGAGTTGCCGTCTAAGGTGGCTAAACTACCTTCGCCCTAATCTCAAGCATGGTGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAACCTGTACATTAGTATTGGAAGCAGGTGGTCAGTTATTGCGGCTCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACTAGGCTGAAAAAGAAGCTACTTGGGAAGCACCGCAAGGAACAACAAGCACATAGTAATAGAGGCAATATCAGTGTTGTTAAGCAAGAAAGCAATATTAATAGAGGAAGTGATGGTGGTGGTGATTGTGATTCCTTAATATCTTTATTGGTTCATGAAAATAGTACTCAACAACAGCCATATTGGTCACAGATCATGATGCCTGTGCTGCAGCCAGAGAGTCACGCAAACCAACAATTAGGACCTTGTTTCAATGACCAAGATTCTATCAAGAAACTGCTTATAAAGCTTGGAGGGAGATTTTCTGATGATGATTATTACCACCCTACCCTTGATGGTTTTAATCCTCAATTCTCATCACATGGTACTCTTTCAACACAAAAAATTTATCAAGAGCAAGTCCATGTGGGATCTTCTGCTTGCATTGACAACAACACCATTAATAGCAACAATGGAGTACAATTTGCACAGAATAATCATCAATACCGTGCACAGGGTGATGGATTTGACTTGGTTCATGGACAGGGAAGTTTCACTGAAGCAATTGAGGAAATGGTGTCTACCAATTTTCCACAAAGATTAAATGAGTTGGAGTTCTTCTATGGTGAAGAGGATATGGTCGGTGATAAGATAATCATAGGCTCTAGTACTACTAGTTGTAGCCAAAGGCCTAATAACTGGGGTGAGACTAGTACCACTCCAATTTATCACCCTCTTGTTGATTCTAATTACCAAGGTCAAGGTGTGAGGGAACAGACAACACAAGAATGTGCATTGCAAGAGTTTAGTTACCCCGGGGAGGAATAG 1137 0.4142 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICNLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQAHSNRGNISVVKQESNINRGSDGGGDCDSLISLLVHENSTQQQPYWSQIMMPVLQPESHANQQLGPCFNDQDSIKKLLIKLGGRFSDDDYYHPTLDGFNPQFSSHGTLSTQKIYQEQVHVGSSACIDNNTINSNNGVQFAQNNHQYRAQGDGFDLVHGQGSFTEAIEEMVSTNFPQRLNELEFFYGEEDMVGDKIIIGSSTTSCSQRPNNWGETSTTPIYHPLVDSNYQGQGVREQTTQECALQEFSYPGEE* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1966 378 MobiDBLite consensus disorder prediction 129 148 - -
Dod08g1966 378 CDD SANT 71 113 IPR001005 -
Dod08g1966 378 MobiDBLite consensus disorder prediction 120 148 - -
Dod08g1966 378 Gene3D - 70 141 - -
Dod08g1966 378 Gene3D - 7 68 - -
Dod08g1966 378 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod08g1966 378 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod08g1966 378 CDD SANT 16 62 IPR001005 -
Dod08g1966 378 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 356 - -
Dod08g1966 378 SMART sant 13 64 IPR001005 -
Dod08g1966 378 SMART sant 67 115 IPR001005 -
Dod08g1966 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod08g1966 378 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod08g1966 378 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod08g1966 378 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dod08g1966 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dod08g1966 378 PANTHER OS09G0431300 PROTEIN 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1966 Dod-Chr8 46655185 46657131 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1966 1 297 MYB Transcription Factor Family AT3G49690 49.020 1.72e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g1966 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1966 K09422 - gmx:100800290 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1966 08 46655185 46657131 Dod08g1966 08 46655185 46657131 ECH
Dod08g1966 08 46655185 46657131 Dod09g2005 09 41548670 41550365 PCT