Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1962 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTTAAGAGAGGTCAATGGTCTCCTGATGAAGATGCAACACTCAAGAGTTATGTAGAGACTCATGGCACTGGAGGAAATTGGATTGCATTGCCAAGAAAAGCTGGCCTCAAGCGGTGTGGCAAGAGTTGCCGTCTAAGGTGGCTCAATTATCTTAGGCCAGACATAAAACATGGAGGCTTCACTGAAGAGGAGGATAACACCATTTGCGCCCTCTATAGCCAAATGGGTAGCAGATGGTCTGCCATAGCATCTCAACTTCCTGGCAGAACAGACAATGATGTGAAAAACTACTGGAACACAAAACTAAAGAAGAAGCTAATGGCAGGAAAAGTTAACCTCAAGACATTGACTGAAAGTGACCCTCTTCCTTCAACCCCATTATCACTGACCCAAAATGCTAATAATACTCAAAATTCAGATTTCAGTGCTACACAAAATCAAAATTCTCCACCATCAGTTCACCCAATCTTAAGCAATGAAGCTAGTTCTGGATTCAACATTAATAAGGAAACCATGAATTTTGGCCTCATTCATCAACTTTACAACAGTCCACAACCACAAACAATGAATGTTGCCTCGTCACAAATTTGTGCAAGTTCAAGGAACAATGATAAACACCCTTTGGTGTCATTGTCTCAAGAAGGTTCAAGCATTTCTGATTCATCTTCAATTGCAGGTGGACTATAA 720 0.4139 MGRAPCCDKANVKRGQWSPDEDATLKSYVETHGTGGNWIALPRKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDNTICALYSQMGSRWSAIASQLPGRTDNDVKNYWNTKLKKKLMAGKVNLKTLTESDPLPSTPLSLTQNANNTQNSDFSATQNQNSPPSVHPILSNEASSGFNINKETMNFGLIHQLYNSPQPQTMNVASSQICASSRNNDKHPLVSLSQEGSSISDSSSIAGGL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1962 239 MobiDBLite consensus disorder prediction 128 171 - -
Dod08g1962 239 CDD SANT 71 113 IPR001005 -
Dod08g1962 239 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod08g1962 239 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod08g1962 239 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dod08g1962 239 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod08g1962 239 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod08g1962 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod08g1962 239 MobiDBLite consensus disorder prediction 215 239 - -
Dod08g1962 239 SMART sant 13 64 IPR001005 -
Dod08g1962 239 SMART sant 67 115 IPR001005 -
Dod08g1962 239 Gene3D - 7 68 - -
Dod08g1962 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dod08g1962 239 PANTHER OS09G0431300 PROTEIN 1 205 - -
Dod08g1962 239 MobiDBLite consensus disorder prediction 127 171 - -
Dod08g1962 239 PANTHER OS09G0431300 PROTEIN 1 205 - -
Dod08g1962 239 Gene3D - 69 160 - -
Dod08g1962 239 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1962 Dod-Chr8 46512481 46514642 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1962 1 118 MYB Transcription Factor Family AT3G49690 81.356 2.70e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g1962 Myb_DNA-binding 4.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1962 K09422 - gmx:100789985 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1962 08 46512481 46514642 Dod08g1962 08 46512481 46514642 ECH