Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0049 ATGTTTTCGGCCTCTTCCTATCATCTCTGGTTTCTTCTACTGCTCCCTCGGTGTCCACCTTTTTCTGTTCTTCCTGTTCCTTCCTCGCGGTTTCTCACAATCGTTCTCTCAGCCCTCACTCAGTCTCTTTCACTCACAGCATGTTATTGGGATCTAAAGTGTCTCTCTTATGTTCATGTATTACGCATCTCTTTCTTCCCTGTGTTAATTTCTTCCTTTCTGGAATGTTCAAATTCAAAATCACGCTATCTGTTCAAATTTTTTGAGAAATTGAGAGTTGAAGATGCGATGGGCAACGTCTTTGCTAAAAAGCGTAACGCTCAATTGTCCAGAAATGCTAAAGAAGAACGCAGAAGAAGCATTTCCTCCGACCTAAGAAGCCGAGCGGCGCCTCAAATTACACTACCACAGTCACTGCCGCCGCCGCCAACGACGACGAGGATGTCGAAGGAACCGAGTTTCAGTAGGGAATCTGCGGGACAAAGCTCCATCATGGAAAAGAAGTCATCTACAAAGAAGAAATATGCTTTGATTCTTGATCAGTTCGCTACCCTAGAGCAGGTTACAACAGCCTTGAGGAAAGAAGGTTTAGAGTCATCAAATCTTATCCTTGGAATTGACTTCACGAAGAGCAACGAATGGACTGGCAGAATGTCATTCAATAATAGAAGCTTGCATGCTATTGGGGGGACACCTAACCCCTACGAGAAGGCTATCTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTAATTCCTTGTTTTGGCTTTGGTGATGCTACCACTCATGACCAAGAAGTGTTTAGCTTTCACAGTGATCATTCACCCTGTCATGGTTTTGAGGAAGTTCTAGCTTGCTACCAAAAAATAGTTTCAAACTTGAAACTTTCAGGGCCAACTTCTTACGGTCCCGTGATTGAGGCTGCAATAGACATAGTCGAGAAGAATAGTGGCCAATTCCATGTGTTGGTTATAATTGCAGATGGCCAGGTTACAAGAAGTGTCAACTGTGATGATGGAGAACTTAGTCCTCAAGAACAGAAGACCATCCAAGCAATTGTTGATGCAAGTTCATATCCGCTTTCGATTATTCTCGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAAAAGTTTGATGACAAGATACCGGCACGTGATTTTGACAATTTTCAGTTTGTTAATTTCACTGGTATTATGTCTAAAAATGTTAGCCCCTCTGAGAAAGAAGCAGCTTTTGCTCTGGCTGCTCTCATGGAGATACCGTTCCAGTATAAAGCAGCCATTGAACTTGGAATACTTGGACGTGTAACGGGAAGAGCAAAAAAAATAGTTCCACGACCTCCTCCAGTTCCTTACTCTCGACTTGCACCACCTGCTCGTGTACTGAGCAATATGCCAGCATCCATTGACGATGAACGAAACCAGATGGTCTGCCCTATTTGCTTGACAAATACAAGGGATTTGGCCTTTCAATGTGGGCACATGACTTGCAGAGATTGTGGATCCAGGTTAACTGACTGTCCAATATGCCGAGAGAGGATCACTACTCGTCTCAGGGTGTTCACTGGGTGA 1584 0.4381 MFSASSYHLWFLLLLPRCPPFSVLPVPSSRFLTIVLSALTQSLSLTACYWDLKCLSYVHVLRISFFPVLISSFLECSNSKSRYLFKFFEKLRVEDAMGNVFAKKRNAQLSRNAKEERRRSISSDLRSRAAPQITLPQSLPPPPTTTRMSKEPSFSRESAGQSSIMEKKSSTKKKYALILDQFATLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRMSFNNRSLHAIGGTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKIVSNLKLSGPTSYGPVIEAAIDIVEKNSGQFHVLVIIADGQVTRSVNCDDGELSPQEQKTIQAIVDASSYPLSIILVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFTGIMSKNVSPSEKEAAFALAALMEIPFQYKAAIELGILGRVTGRAKKIVPRPPPVPYSRLAPPARVLSNMPASIDDERNQMVCPICLTNTRDLAFQCGHMTCRDCGSRLTDCPICRERITTRLRVFTG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0049 527 MobiDBLite consensus disorder prediction 132 167 - -
Dere08g0049 527 SMART VWA_4 199 402 IPR002035 -
Dere08g0049 527 MobiDBLite consensus disorder prediction 148 166 - -
Dere08g0049 527 Gene3D von Willebrand factor, type A domain 231 406 IPR036465 -
Dere08g0049 527 PANTHER COPINE FAMILY PROTEIN 1 142 501 - -
Dere08g0049 527 SMART ring_2 482 514 IPR001841 -
Dere08g0049 527 Pfam Zinc finger, C3HC4 type (RING finger) 479 520 - -
Dere08g0049 527 ProSiteProfiles Zinc finger RING-type profile. 482 515 IPR001841 -
Dere08g0049 527 Coils Coil 99 119 - -
Dere08g0049 527 SUPERFAMILY RING/U-box 469 521 - -
Dere08g0049 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 527 IPR013083 -
Dere08g0049 527 Pfam Copine 224 437 IPR010734 -
Dere08g0049 527 SUPERFAMILY vWA-like 200 382 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0049 Dere-ChrDere08 1466457 1484046 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0049 08 1466457 1484046 Dere08g0049 08 1466457 1484046 ECH