Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01361 ATGGCTCTTGGCGACGATGCATCACACCAATCTCCCTCGCTCCTCGATGCCCTTTTATGTGAAGAGCGAGACACTTTCGAGGGGGATTTTGATGAGAACGGTGATGAGTGTGAGACCAATAACAATGACCCATCTGCGAGAAAGCCGCAATCTTTACCCTTGGTTTTGCTGGACAATGACCTGTTCTGGGAAGATGAAGAGCTTGTGTCTTTAATCTCGAAAGAGGGAGAGACCCATTTGTGTTCTCTCAGTGTCATTGCTGATGGGCCCTTGGAAGGGCCTCGTGTGGAGGCTGTGAACTGGATTTCCAAAGTGTGTGGACATTATGGGTTCTCTTGTTTGACCATTGTTCTTGCTGTTAACTACTTTGATAGGTTCATTACAAGTTTGAGGTTTCAGAGGGACAAACCATGGATGACACAGCTCACTGCCGTGGCTTGTTTGTCCCTTGCTGCCAAGACGGAAGAGACCCATGTGCCGCTTCTTTTGGACCTTCAAGTGGAGGAGTCAAGGTTTGTGTTTGAAGCAAAGACTATTCAGAGAATGGAGTTGTTGGTGTTGTCTACTCTTAAATGGAGGATGCATCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTGAGAAGGCTTGGTTTGAAGAGCCGTATGCATTGGGAGTTCCTATGGCGATGTGAGCGGGTTCTTCTCAATGTCATTGCAGATTTGAGGGTTATGAGTTATCTTCCTTCTACATTGGCCGCTGCTACAATGATCCATGTTATTAAAGAGATTGAACCATTTAATGAGACCGAGTATATTGATCAGCTTCTGGGTTTACTGAAGATTAGTGAGGAACAAGTGAACCAGTGCTACAAACTCATGCAGAAACTATTAGGTTGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTATCTGTACCGGGTAGCCCTGGTGGTGTCATTGATGCATCTTTCAGTTGTGATAGCTCCAATGATTCATGGGCTGTGTCATCATCGGGCTCACTTTTGCCGGAGCCTCTGCTTAAGAGGAGAAGAGCTCAGGACCAGCAAATGAGATTGCCTTCTGTTAATCGTGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.4588 MALGDDASHQSPSLLDALLCEERDTFEGDFDENGDECETNNNDPSARKPQSLPLVLLDNDLFWEDEELVSLISKEGETHLCSLSVIADGPLEGPRVEAVNWISKVCGHYGFSCLTIVLAVNYFDRFITSLRFQRDKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRMHWEFLWRCERVLLNVIADLRVMSYLPSTLAAATMIHVIKEIEPFNETEYIDQLLGLLKISEEQVNQCYKLMQKLLGCYEGIYSLHQKRKRLSVPGSPGGVIDASFSCDSSNDSWAVSSSGSLLPEPLLKRRRAQDQQMRLPSVNRVSIDVLNSPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01361 371 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Cca11g01361 371 SMART cyclin_7 100 188 IPR013763 -
Cca11g01361 371 Pfam Cyclin, C-terminal domain 197 293 IPR004367 -
Cca11g01361 371 PANTHER CYCLINS 9 351 IPR039361 -
Cca11g01361 371 SUPERFAMILY Cyclin-like 63 195 IPR036915 -
Cca11g01361 371 SUPERFAMILY Cyclin-like 198 297 IPR036915 -
Cca11g01361 371 SMART Cyclin_C_2 197 325 IPR004367 -
Cca11g01361 371 Pfam Cyclin, N-terminal domain 95 194 IPR006671 -
Cca11g01361 371 Gene3D - 95 195 - -
Cca11g01361 371 PANTHER CYCLIN-D3-2 9 351 - -
Cca11g01361 371 CDD CYCLIN 95 187 IPR013763 -
Cca11g01361 371 MobiDBLite consensus disorder prediction 30 49 - -
Cca11g01361 371 Gene3D - 196 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01361 Cca-Chr11 35202493 35203951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01361 14 361 Core Cell Cycle Gene Families AT5G67260 55.056 1.15e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01361 K14505 - gmx:100785030 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01361 11 35202493 35203951 Cca06g01495 06 29890539 29892247 PCT