Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01532 ATGGGGTTTCAGAAGATAAGGGTTGACAACCCCATCGTCGAAATGGATGGGGATGAAATGACGCGAGTGATATGGAAGCTGATTAAAGATAAGCTTATTTCCCCTTATTTGGAGCTGGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGGGATGCCACTAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATAATGTAGCTATCAAATGTGCTACTATAACTCCAGATGAAGCTCGTGTCAAGGAGTTTAACCTAAGACAAATGTGGAAAAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACAGTTTTTAGGGAGCCAATTATCTGTAAAAACATTCCTCGCTGGACAAAGCCAATATGCATTGGAAGACATGCTTTTGGAGACCAATATCGGGCAACAGATACAGTTATAAAAGGCCCAGGAAAGCTAAAATTGGTGTTTGCTCCCAGTGGAAATGAAGAAACTAAAGAGCTAGAGGTCTATAACTTTACTGGTGCTGGAGGTGTAGCTTTGTCCATGTATAATACTGATGAGTCCATTCGAGCTTTTGCTGAGGCTTCAATGAACGTTGCATACCAGAAAGAATGGCCTCTCTATCTTAGCACTAAAAATACCATTTTAAAGAAATATGATGGAAGATTCAAGGACATTTTCCAAGAGGTTTTTGAAACTCAATGGAGTCAAAAGTTCAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCTTATGCTCTTAAAAGTGATGGAGGTTATGTGTGGGCCTGCAAAAATTATGATGGCGATGTGCAGAGTGACTTCTTAGCTCAAGGATTTGGTTCTCTCGGTTTGATGACATCAGTACTGGTTTGCCCAGATGGGAAAACCATTGAAGCAGAGGCAGCCCATGGCACTGTTACCCGTCATTATCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCGCGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGATTGTTGGACTTCACAGAGAAACTGGAAGCAGCTTGCATCAGAACAGTTGAATTGGGAAAGATGACAAAGGATCTTGCGCTCCTTGTTCATGGACCTAAGGTTTCTAGATCCCAGTATTTGAATACTGAAGAGTTCATAGATGCTGTAGCCGAGGAGCTGCAAACAAGATTATCTTCACAGTCAAAGCTGTAA 1239 0.4165 MGFQKIRVDNPIVEMDGDEMTRVIWKLIKDKLISPYLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPDEARVKEFNLRQMWKSPNGTIRNILNGTVFREPIICKNIPRWTKPICIGRHAFGDQYRATDTVIKGPGKLKLVFAPSGNEETKELEVYNFTGAGGVALSMYNTDESIRAFAEASMNVAYQKEWPLYLSTKNTILKKYDGRFKDIFQEVFETQWSQKFKAAGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACIRTVELGKMTKDLALLVHGPKVSRSQYLNTEEFIDAVAEELQTRLSSQSKL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01532 412 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 411 IPR004790 GO:0004450|GO:0006102
Cca10g01532 412 PIRSF IDH_NADP 1 409 IPR004790 GO:0004450|GO:0006102
Cca10g01532 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 406 - -
Cca10g01532 412 Pfam Isocitrate/isopropylmalate dehydrogenase 8 398 IPR024084 -
Cca10g01532 412 SMART Iso_dh_2 11 398 IPR024084 -
Cca10g01532 412 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 269 288 IPR019818 GO:0000287|GO:0016616|GO:0051287
Cca10g01532 412 Gene3D Isopropylmalate Dehydrogenase 4 411 - -
Cca10g01532 412 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 411 - -
Cca10g01532 412 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 4 407 IPR004790 GO:0004450|GO:0006102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01532 Cca-Chr10 25067377 25071734 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01532 K00031 - gmx:606295 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01532 10 25067377 25071734 Cca10g01532 10 25067377 25071734 ECH