Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01494 ATGGGCAACCTCTTTGGCAAAAATAAAAAGCAAGGAACTCAAAGTTCTAGAAGTGATAAAGGAAGAAGAATCTACACCACCACCGTCAATACCAGAGGCTTACCTTCCAATATCTCAACCCAATTGCCTCAGCGACAACCGCTATTGTATCCAACTCTAGAAccgccgccgccgctaccaccgccgTCAATGCCCAGGAAACCAAGTTTTGGAAGAGTTAACTCCAAACAGAGCTCATCAGTAATGAATACAAAACAACCTGCCAAGAAGTATGCTTTGATTACTGATAACTTCACCACCCTTGAACAGGTCACAACGGCCCTGAGGAAAGAAGGATTAGAATCATCAAATCTCATCCTTGGAATTGATTTTACAAAGAGCAATGAATGGACTGGAAGAATCTCATTCAATAATAGAAGCCTGCATGCTATTGGAAGTACACCTAACCCTTATGAGAAGGCCATCTCCATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGAGATGCTACCACCCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCTCCTTGCCATGGCTTTGAGGAAGTTTTAGCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCGGTGATTGAGGCTGCTATAGACATAGTTGAGAAAAATCGAGGCCAATTCCATGTGTTGGTTATAGTTGCAGATGGCCAGGTTACAAGAAGTGTCAACACAGCAGATGGAGAACTCAGTCCTCAAGAAGAGAAGACAATTAAAGCAATTGTTGATGCAAGTGCCTATCCGCTTGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAGAAAGTTTGATGACAAGATACCGGCACGTGATTATGATAATTTTCAGTTTGTTAATTTCACAGAGATTATGTCGAGAAACACGAGCCCCTCTGAGAAAGAAGCTGCATTTGCTCTTGCAGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCATAGAATTTGGAATACTGGGACGTGTAACAGGGAGAGCAAAGAGAATAGTTGCAAAACCTCCTCCTGTTCCTTATTCTAGGGTTGCACCAACACCACCATCACTAGCTCGTGTACCCAGCAATACAACAGCATCCACTGCAGATGACCAAAACCAATCGGCCTGCGCTGTTTGTTTGACCAATGCAAGAGATTTGGCCTTTGGATGTGGGCACATGACTTGCAGAGAGTGTGGATACAAGTTAACCAATTGCCCCATGTGCCGAGAGAGAATCACTAGTCGTCTCAGGGTGTACAGTGGATGA 1344 0.4241 MGNLFGKNKKQGTQSSRSDKGRRIYTTTVNTRGLPSNISTQLPQRQPLLYPTLEPPPPLPPPSMPRKPSFGRVNSKQSSSVMNTKQPAKKYALITDNFTTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNNRSLHAIGSTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLVIVADGQVTRSVNTADGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDKIPARDYDNFQFVNFTEIMSRNTSPSEKEAAFALAALMEIPFQYKATIEFGILGRVTGRAKRIVAKPPPVPYSRVAPTPPSLARVPSNTTASTADDQNQSACAVCLTNARDLAFGCGHMTCRECGYKLTNCPMCRERITSRLRVYSG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01494 447 MobiDBLite consensus disorder prediction 70 85 - -
Cca10g01494 447 MobiDBLite consensus disorder prediction 375 394 - -
Cca10g01494 447 MobiDBLite consensus disorder prediction 1 47 - -
Cca10g01494 447 SUPERFAMILY vWA-like 116 299 IPR036465 -
Cca10g01494 447 SMART ring_2 402 434 IPR001841 -
Cca10g01494 447 SMART VWA_4 115 317 IPR002035 -
Cca10g01494 447 ProSiteProfiles Zinc finger RING-type profile. 402 435 IPR001841 -
Cca10g01494 447 Pfam Copine 140 351 IPR010734 -
Cca10g01494 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 446 IPR013083 -
Cca10g01494 447 Pfam Zinc finger, C3HC4 type (RING finger) 399 440 - -
Cca10g01494 447 MobiDBLite consensus disorder prediction 49 67 - -
Cca10g01494 447 CDD RING-HC_RGLG_plant 402 445 IPR045317 GO:0061630|GO:0070534
Cca10g01494 447 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 1 446 - -
Cca10g01494 447 PANTHER COPINE FAMILY PROTEIN 1 1 446 - -
Cca10g01494 447 MobiDBLite consensus disorder prediction 1 85 - -
Cca10g01494 447 SUPERFAMILY RING/U-box 397 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01494 Cca-Chr10 23847204 23858551 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01494 10 23847204 23858551 Cca10g01494 10 23847204 23858551 ECH
Cca10g01494 10 23847204 23858551 Cca04g01667 04 26560315 26573201 PCT