Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00481 ATGACCCACCTCGCTGCTGTCGCTTGCCTCTCCCTCGCTGCCAAACTGGAGGAGACACAAGTCCCCCTTCTCCTCGACCTCCAAGTGGAGGACACTCCATACTTGTTCGAAGCCAAGGCCATCAAAAAGATGGAGATTTTCGTACTTTCCACTCTTGGCTGGAGGATGAACCCTCCCACCCCTCTCTCCTTTCTTCATTACATCACTGCAAGACTTGCCTTCAAGGATCACTTCCTCACCACCTGCGAGTCCCTTCTTCTCTCTCTCCTTCCAGGTAACTCATTTCCCACGTTACTACAACAATCAACAACTATAATCTATTTCTACTTATATCTTTTTTACATTGCAGATTCCAGGTTTTTCAGTTACCTACCCTCTGTCTTGGCAACTGCTACCATCATGCAAGTTATCAAAAACGTGCACCCTCGTCTAGAAGGTGAATACGAGAGCCAGATCATTGGTATTCTCGGAATCGACAAGGAGGAGGTAAATGAGTGTAGGAAGGTGATGTTGGAATTGTGGAGAGGGTGGGAGCAGAAGCAATGCATGAAACGCAAGTTTGGGTTGGGTTGGGCTCCAGGAAGCCCAAACGGCGTGATGGATGTGTCGTTTAGCGGGGATAGCTCGAATGAGTCGTGGGCGGTGGCGGCTTCTGTGTGTTCCTGGCCGGAGCCATTGTGGAAGAAGAGTAGGAGTGAAGAGCAGCTTCTACTAAACTCACATTTTCTATAA 732 0.4877 MTHLAAVACLSLAAKLEETQVPLLLDLQVEDTPYLFEAKAIKKMEIFVLSTLGWRMNPPTPLSFLHYITARLAFKDHFLTTCESLLLSLLPGNSFPTLLQQSTTIIYFYLYLFYIADSRFFSYLPSVLATATIMQVIKNVHPRLEGEYESQIIGILGIDKEEVNECRKVMLELWRGWEQKQCMKRKFGLGWAPGSPNGVMDVSFSGDSSNESWAVAASVCSWPEPLWKKSRSEEQLLLNSHFL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00481 243 SUPERFAMILY Cyclin-like 2 57 IPR036915 -
Cca07g00481 243 Gene3D - 58 168 - -
Cca07g00481 243 SMART Cyclin_C_2 59 208 IPR004367 -
Cca07g00481 243 Pfam Cyclin, C-terminal domain 59 188 IPR004367 -
Cca07g00481 243 Gene3D - 2 57 - -
Cca07g00481 243 SUPERFAMILY Cyclin-like 60 180 IPR036915 -
Cca07g00481 243 CDD CYCLIN 3 49 IPR013763 -
Cca07g00481 243 PANTHER CYCLIN D3.1 PROTEIN 1 231 - -
Cca07g00481 243 Pfam Cyclin, N-terminal domain 3 57 IPR006671 -
Cca07g00481 243 PANTHER CYCLINS 1 231 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00481 Cca-Chr7 6503765 6504693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00481 1 235 Core Cell Cycle Gene Families AT5G67260 44.672 8.73e-51 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00481 07 6503765 6504693 Cca02g02555 02 46666556 46668742 ECH
Cca07g00481 07 6503765 6504693 Cca07g00481 07 6503765 6504693 ECH
Cca05g00132 05 3117825 3119648 Cca07g00481 07 6503765 6504693 PCT