Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00897 ATGTTCTTCCACGAAGGCGAAGCGGTTCAGCCCTCATATTTCCCGGTTCTCGAAACCACGTTCACGCCGAGCGAAATAGAGGAGCTGTTTTCCCTAGTTAACGAACCGGCCTTCCAGGAAGGCGAAGCGGTTCAGCCCTCATATTTCCCGGTTCTCGAAACCACGTTCACGCCGAGCGAAATAGAGGAGCTGTTTTCCCTAGTTAACGAACCGGCCAGCTCCGGGTCCGGTTCGCATGGCTCGAACCGGGCGGTTCGGTCGACGCACGAGAGAAAGCTTAGGCGAAAGGAGTCGAACCGGGAATCGGCCAGGCGGTCCCGCTGGAGAAAGAAGCGGCACTTAGAGAACCTCACAAACCAACTGAACCGGTTCAAAATGGAAAACCGGGAATTAAGAAACCGGTTATGCTTTACCATGCACGACAATCTTCTACTCTCCGTGGAGAATGAACGCCTTAGCTCCGAATACGTTACCCTTATGGCTACACTCTCGGATCTTTATCAAATTTTAGGCACCATGATTTCACAATAG 531 0.5217 MFFHEGEAVQPSYFPVLETTFTPSEIEELFSLVNEPAFQEGEAVQPSYFPVLETTFTPSEIEELFSLVNEPASSGSGSHGSNRAVRSTHERKLRRKESNRESARRSRWRKKRHLENLTNQLNRFKMENRELRNRLCFTMHDNLLLSVENERLSSEYVTLMATLSDLYQILGTMISQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00897 176 MobiDBLite consensus disorder prediction 71 111 - -
Cca05g00897 176 PANTHER BZIP TRANSCRIPTION FACTOR 44 59 175 - -
Cca05g00897 176 CDD bZIP_plant_GBF1 92 140 IPR045314 GO:0003700|GO:0006355
Cca05g00897 176 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 89 135 IPR004827 GO:0003700|GO:0006355
Cca05g00897 176 Coils Coil 114 134 - -
Cca05g00897 176 Gene3D - 89 168 - -
Cca05g00897 176 SMART brlzneu 87 151 IPR004827 GO:0003700|GO:0006355
Cca05g00897 176 Pfam bZIP transcription factor 91 135 IPR004827 GO:0003700|GO:0006355
Cca05g00897 176 PANTHER BZIP TRANSCRIPTION FACTOR 59 175 - -
Cca05g00897 176 Coils Coil 86 106 - -
Cca05g00897 176 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 94 109 IPR004827 GO:0003700|GO:0006355
Cca05g00897 176 SUPERFAMILY Leucine zipper domain 91 143 IPR046347 GO:0003700|GO:0006355
Cca05g00897 176 MobiDBLite consensus disorder prediction 84 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00897 Cca-Chr5 24188194 24188724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00897 36 170 bZIP Transcription Factor Family AT3G49760 37.241 1.60e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca05g00897 bZIP_1 3.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00897 - - ccaj:109815739 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00897 05 24188194 24188724 Cca03g01776 03 36932465 36933117 PCT