Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00896 ATGGAGAAGATCTGCGTCGCCGTTCGTCTTCGCCCTCCGGTTTCCGAAGACGCTTCTTCTTCTGTTGGAACCTTCTGGAAGGTCGAAGATAACCGCATCTCTCTCCACAAGATCCATGGCACTCCTCTCTCGGCCTCTTCTTACGCTTTCGATCACATATTCGACGAAGGAAGCACCAATGCTAGCGTCTACGAGCTCCTCGCCAAGGATATCATTCACGCGGCGCTCGACGGCTTCAACGGAACTGCATTTGCGTATGGGCAGACCAGTAGTGGAAAGACTTTTACCATGAATGGTTCTGAGACTGACTTGGGAGTGATTCCTCGTGCAGTTAGAGACATATTTGCGACAATTGAGACGATGTCTGATCGAGAGTTTCTGATAAGAGTTTCCTACATGGAGATCTACAATGAAGAAATTAATGACCTTCTTGTTGTTGAAAATCAGAAATTGCAAATTCACGAGAGTTTGGAGCGTGGAGTATTTGTTGCCGGACTGAAAGAGGAAATTGTAAATAACGCTGAACAAGTACTTGATCTCATTAAAGCAGGGGAAGTTAACAGACACTTTGGTGAGACAAATATGAATGTAAGGAGTAGCAGATCGCACACAATATTTAGAATGGTGATTGAAAGTAAAGGAAAAGATTCCATTTCTTCCAATGATTCAATTAATGATGTTGTTCGAGTTTCAGTCTTGAATTTAGTAGATCTAGCTGGTTCTGAAAGGATTGCTAAAACTGGAGCTGATGGGGTACGTTTAAAAGAAGGGAAATATATTAACAAGAGCTTGATGGTTTTGGGAAACGTTATTAACAAACTAAGTGAGGGTTCGAAGCAAAGGGGGCATATCCCATATCGTGATAGTAAATTAACTCGTATACTCCAACCTGCTCTTGGTGGTAATGCCAAAACGTCAATTATTTGCACCATAGCCCCAGAAGAGATTCACATCGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGTAGAGCCAAACGCATCACCAATTGCGTTCAAGTGAACGAGATATTGACGGATGCAGCTTTGTTAAAACGGCAACAATTAGAGATAGAGGAGCTACGTAAGAAGCTTCAGGGATCCCATGCTGAGGTGCTCGAGCAAGAGATTTTTAAACTCAGGAACGATTTGCTCAAGTTTGAAATGGAGCGTGGGAAGCTTGAAATGGAACTACAAGAGGAGAGGAAATCTCGTGATCAATGGATTAGGGAGCAACGGATGAAAATCGAAAATTCCACTACTAAATCTTTCTCAGACTGTGGGACGAACGACAGTCAGGGACCGGGATTTTTGAGGCACGGATTTATGGAAGAATTCAGTGACATTAGTAGTATATCTCAAGGAGGTATTTTTAAATCTCCTAAGGTAGATCCCAGTGCTTTTGTAGCAAGGCGATCAAAGTGTTCAACATTGCCAGATTACAGCCCCCTTCCCGATGCTTTCAGTAATGTGGTTGATGAAGATATGTGGTTGAAAATGAACAACGGTTATGTTGCAAACCTTGATTCCCTTCAAGATACTCCCGATAGAAAAGTTCAGTCATTCCCGACAAGTGATGCTACTGCTGGTTGTACAAGTGAAATTGAGAAGTATGAACGAGAGGTTCATGATTTGAGGAGACAACTGGAACTTGCTAAAGAAAGGATAAATGAACTCGAGCAAAGGCATTTAGAGGAAGTGCCATCAAACAAGCAATTAATGAGCGAGCCACCAAATAATCAACAAGAAACATTACTAAATCATGAATTGCCTCTGAGGTTATCTGAATCTGTGGGAAACTTCAAAGATAGCTTTGAAGAGGTTTTGTCAGTAATGCAGAGATTTGCATCGGGTGGCACATTATCGACTGCCAAGATACTTTCAACCATGAGTGAAATTGGAGCTCATCTATTTGCAACTTTGGAAGGTCATGTTGCAGTGAATATGAGTGGTGAAAGGTCTTCCACTGGGAACTGTACTTTAATCAATGAGCAACAGAAAGTGTTTCGTGAGAGGATTGATAATATAATTACATCGCTGGAGTCATCGGAAAGCTCAATAACAGAAGGACAGGAGAGGAAACATAAGTGCAGCTGTGAACACAAGGGCTCTGGTTTGGGAGGAGAAACTGCTTACTCAAAGGAGGATTTAAATGAAAGATATGAAAACCTGGAAAGGGAGTTACTACTTTTGAAGGGGGAAAGAGACTCTTTGCTGCAGAACTACTCTGAATCATCGGAGAAACTAGCCATGGTTTCCAGCCAAAAGGAAAATGTTTTGAAAGATTTAAATTCTGAAGTAGAGAGAAGGAAAAATCTAGAAGGGGAAGTTAAGAAGTTTACTGCAGCTTTTGCTAGTCGTCAGAAATCACTCATTTCTTTCCATAGTGATCTTAAGACCAAAATTGAGAAATGGAGAGCCCAGACTCCAATCTCAGTGCCCAAATCTTTTGGGTGTCAGGACTAG 2463 0.4178 MEKICVAVRLRPPVSEDASSSVGTFWKVEDNRISLHKIHGTPLSASSYAFDHIFDEGSTNASVYELLAKDIIHAALDGFNGTAFAYGQTSSGKTFTMNGSETDLGVIPRAVRDIFATIETMSDREFLIRVSYMEIYNEEINDLLVVENQKLQIHESLERGVFVAGLKEEIVNNAEQVLDLIKAGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDSISSNDSINDVVRVSVLNLVDLAGSERIAKTGADGVRLKEGKYINKSLMVLGNVINKLSEGSKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEIHIEETRGTLQFASRAKRITNCVQVNEILTDAALLKRQQLEIEELRKKLQGSHAEVLEQEIFKLRNDLLKFEMERGKLEMELQEERKSRDQWIREQRMKIENSTTKSFSDCGTNDSQGPGFLRHGFMEEFSDISSISQGGIFKSPKVDPSAFVARRSKCSTLPDYSPLPDAFSNVVDEDMWLKMNNGYVANLDSLQDTPDRKVQSFPTSDATAGCTSEIEKYEREVHDLRRQLELAKERINELEQRHLEEVPSNKQLMSEPPNNQQETLLNHELPLRLSESVGNFKDSFEEVLSVMQRFASGGTLSTAKILSTMSEIGAHLFATLEGHVAVNMSGERSSTGNCTLINEQQKVFRERIDNIITSLESSESSITEGQERKHKCSCEHKGSGLGGETAYSKEDLNERYENLERELLLLKGERDSLLQNYSESSEKLAMVSSQKENVLKDLNSEVERRKNLEGEVKKFTAAFASRQKSLISFHSDLKTKIEKWRAQTPISVPKSFGCQD 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00896 820 Pfam Kinesin motor domain 9 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00896 820 SMART kinesin_4 1 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00896 820 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00896 820 PRINTS Kinesin heavy chain signature 193 210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00896 820 PRINTS Kinesin heavy chain signature 232 250 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00896 820 PRINTS Kinesin heavy chain signature 284 305 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00896 820 Gene3D Kinesin motor domain 1 366 IPR036961 -
Cca05g00896 820 CDD KISc_CENP_E 3 334 - -
Cca05g00896 820 Coils Coil 527 561 - -
Cca05g00896 820 ProSitePatterns Kinesin motor domain signature. 231 242 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca05g00896 820 ProSiteProfiles Kinesin motor domain profile. 3 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00896 820 Coils Coil 755 775 - -
Cca05g00896 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 366 IPR027417 -
Cca05g00896 820 Coils Coil 350 410 - -
Cca05g00896 820 PANTHER CENTROMERE PROTEIN E 2 429 - -
Cca05g00896 820 PANTHER CENTROMERE PROTEIN E 2 429 - -
Cca05g00896 820 Coils Coil 713 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00896 Cca-Chr5 24131621 24142099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00896 2 396 Miscellaneous Gene Families AT2G21380 44.612 5.78e-93 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00896 K11498 - gmx:100804944 1375.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00896 05 24131621 24142099 Cca05g00896 05 24131621 24142099 ECH