Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00894 ATGGCTCGTGAGCAGGCACAGAAAGCGAACCAGGGAATGCAGTCAGAAACAACTGATACATCCAATGCTGTTGTCTCCTCCACTGCGACATCAACAGCAGCTAATGCAGCTAGCTCAATCACTTCTTTGACATCAAATGGGCTTGAATCTAGCCCATCTTCTGTCACACCAATTGCAGCAACCGATTCTCAACAGTTGGTTTCTGGGTTATCTGGGACATCTGTTTCTCACTCTGTAGTTACCTCAAACACTACAGGAGCTGAACCAAGCACTGTGGCAACTACGAGTGCTGCACCTACAATAGTTGCAGGAAGCTCTGGACTGGCTGAGAATTCACCTCAACAATCCAAAATGCCACCCATTGTTGAAAATCAAGCATCTCAAGATTTTGCTTCTGTAAATGGATCTTCTCTTCAAGATATTGAGGAAGCCAAAAGAGGATTGCCTTTGGTTGGAAAAAACAATGTGATTCCAACGGAGGAGAAAACCAATGAAGATGAAACCTTGGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTTTGGAATCTGTGAATGTTCAGTCTGATTGGACATGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTGGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAAAGCCCGTGAAGAATTCACAAAGATGTTGGAAGAGTGCAAGGAACTTACATCATCCATGAGATGGAGCAAAGCTATTAGTATGTTTGAGAATGATGAACGATTCAATGCTGTCGAAAGACCAAGAGACCGAGAAGATTTATTTGAAAGCTATATGGTGGAACTTGAGAGGAAGGAAAAAGAAAATGCTGCAGAGGAGCACCGTCGAAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGATTATGTGAAGGTGAATAGTCATTGGCGAAAAATCCAAGATCGGCTAGAGGATGACGATAGATACTTGCGACTTGAAAAAATTGACCGCTTGCTAGTCTTCCAGGACTATATTCGGGACTTGGAGAAAGAAGAAGAGGAACAAAAAAGAATACAGAAGGATCGAATCCGCCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTTGAAGAACATGTTGCTGCTGGAAATCTGACTGCTAAAACTCAATGGAGAGAATATTGCTTGAAGGTAGTCAGGGATTTACCTCAATATCAAGCTGTTGCGTCAAATACATCTGGTTCCACACCAAAGGATTTATTTGAGGATGTTGCTGAGGAACTTGAAAAACAGTATCATGAAGACAAGACGCTCATAAAAGATACAATTAAGTCAGGCAAGATCATTGTAGTGACTACATCAATATTTGAGGACTTTAAGGTTGCTGTCTTGGAAGAAGCTGCATGCCAAACAATATCTGAAATCAATTTGAAGCTTATATTTGAAGAGTTGTTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACATGTTATATACAATCAAGGATATTACTACTTCTTCAAAATGGGAGGACTGCAAGCCCCTTTTTGAGGAGACTCAGGAGTACAGGTCAATTGGAGACGAAAGCTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTAAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGAGAAGAGGAGAAGGCCAaaaaggagaaagaaagagaagagaaagagaaacggaaggagaaggagaaaaaagaaaaggatagagaacgtgaaaaggaaaagtctaaggaTCGCCATAGGAAGGATGAAACGGATAGTGATAATCAGGACATAACTGATAGCCATGGTTACaaagaggagaagaaaaaagaaaaggacaaggagaggaaacatcggaaaagaCATCAGAGCAGTATGGAGGATGTGGATTCCGAAAAGGAAGAGAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTAGGAAGCATGCGAACTCTCCTGAATCAGACAATGAAAGTCGGCATAGAAGACACAAGAGGGAGCACTGGGATGGTTCCAGGAAAATTGGGGGGCTTGAGGAGCTTGAAGATGGGGAGCTTGGGGATGATGCAGAGAACTAG 2205 0.3946 MAREQAQKANQGMQSETTDTSNAVVSSTATSTAANAASSITSLTSNGLESSPSSVTPIAATDSQQLVSGLSGTSVSHSVVTSNTTGAEPSTVATTSAAPTIVAGSSGLAENSPQQSKMPPIVENQASQDFASVNGSSLQDIEEAKRGLPLVGKNNVIPTEEKTNEDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKKAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLEEHVAAGNLTAKTQWREYCLKVVRDLPQYQAVASNTSGSTPKDLFEDVAEELEKQYHEDKTLIKDTIKSGKIIVVTTSIFEDFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNMLYTIKDITTSSKWEDCKPLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKDRHRKDETDSDNQDITDSHGYKEEKKKEKDKERKHRKRHQSSMEDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNESRHRRHKREHWDGSRKIGGLEELEDGELGDDAEN 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00894 734 MobiDBLite consensus disorder prediction 7 37 - -
Cca05g00894 734 MobiDBLite consensus disorder prediction 1 37 - -
Cca05g00894 734 MobiDBLite consensus disorder prediction 67 95 - -
Cca05g00894 734 ProSiteProfiles FF domain profile. 241 296 IPR002713 -
Cca05g00894 734 Gene3D FF domain 511 585 IPR036517 -
Cca05g00894 734 SUPERFAMILY FF domain 235 303 IPR036517 -
Cca05g00894 734 MobiDBLite consensus disorder prediction 689 723 - -
Cca05g00894 734 Gene3D FF domain 230 304 IPR036517 -
Cca05g00894 734 Gene3D FF domain 373 455 IPR036517 -
Cca05g00894 734 Gene3D FF domain 305 372 IPR036517 -
Cca05g00894 734 ProSiteProfiles FF domain profile. 174 228 IPR002713 -
Cca05g00894 734 Pfam FF domain 522 569 IPR002713 -
Cca05g00894 734 Pfam FF domain 385 441 IPR002713 -
Cca05g00894 734 Pfam FF domain 312 360 IPR002713 -
Cca05g00894 734 Pfam FF domain 243 293 IPR002713 -
Cca05g00894 734 Pfam FF domain 176 225 IPR002713 -
Cca05g00894 734 Coils Coil 655 675 - -
Cca05g00894 734 Coils Coil 290 319 - -
Cca05g00894 734 SUPERFAMILY FF domain 301 370 IPR036517 -
Cca05g00894 734 SUPERFAMILY FF domain 165 228 IPR036517 -
Cca05g00894 734 SUPERFAMILY FF domain 376 452 IPR036517 -
Cca05g00894 734 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 1 729 IPR039726 GO:0045292
Cca05g00894 734 SMART FF_2 309 363 IPR002713 -
Cca05g00894 734 SMART FF_2 517 572 IPR002713 -
Cca05g00894 734 SMART FF_2 383 445 IPR002713 -
Cca05g00894 734 SMART FF_2 174 228 IPR002713 -
Cca05g00894 734 SMART FF_2 241 296 IPR002713 -
Cca05g00894 734 SUPERFAMILY FF domain 518 579 IPR036517 -
Cca05g00894 734 Coils Coil 570 621 - -
Cca05g00894 734 MobiDBLite consensus disorder prediction 656 680 - -
Cca05g00894 734 ProSiteProfiles FF domain profile. 309 363 IPR002713 -
Cca05g00894 734 MobiDBLite consensus disorder prediction 580 734 - -
Cca05g00894 734 Gene3D FF domain 174 229 IPR036517 -
Cca05g00894 734 Coils Coil 499 523 - -
Cca05g00894 734 ProSiteProfiles FF domain profile. 381 445 IPR002713 -
Cca05g00894 734 Coils Coil 357 377 - -
Cca05g00894 734 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 1 729 - -
Cca05g00894 734 Coils Coil 222 245 - -
Cca05g00894 734 MobiDBLite consensus disorder prediction 580 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00894 Cca-Chr5 24107621 24125439 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00894 K12821 - gmx:100819928 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00894 05 24107621 24125439 Cca05g00894 05 24107621 24125439 ECH