Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00891 ATGGATCTTGGGGTGATGGGTTTGGAGGGGTTGGACAGTGTTGCTTCCTTTGGTTGTTCATCTCTTGCTTCAGATCCTGAGGCAAAGCACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGGACTGTCACAAGTGAAGATGATGGTGATGAGTGGAGAGCTTCAAAAGTGGCTAAAACTCATGACATGTCTTCTGCATCATCCAAAGCAATGCTGTTTCATCACAGAAACTCCTTGCTGAGATCTAATGCTGCCACTCTCTTCTCTGACCATCATCACTCACAAATGCTGAGCTTTTCCTCTCCAAAGTCAGAAACTTTGTTGCTGGATAATAAGCCCTCCTCAAATGCCACATTGCCTTTTTCTTTGTCTAGTAATTACAACAGGAGTACAGGTTACAATTCGGGAAGCAATAGCATGCATGGGGCATTAGTTGGTGCTATAGGGCTATTCACTCCATCACAGTGGATGGAGCTTGAACACCAGGCTTTGATCTACAAGTACATCACAGCAAACGTGCCTGTACCCTCTCATCTTCTCATACCAATCAGAAAAGCACTTGATTCTGCTTCCTTCTGCAACTTCTCAACCGGGCTCCTCAGACCTAACACATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGATCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGTAAGAAATGGCGGTGCTCGAGAGATGCCGTAGTGGATCAGAAGTATTGCGAGCGACACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCAACACCACCACTACTCCTAATGCTTCCTCTAACTCCATTGTGGTGCCCGGCAACAACACCACCACCTTTGCACACTCCTCTTCTGCCAACACCATCAATAGGATGTTTGTGAGCAACAAAGAGAACAACAATGCAAGTGAGAGGATGCCGGATGGCCCTGCCCTTCCCATGTTACCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAACCCTTTCATGATTTATAAACACCAAATCCCCTCATATGATGAATCATCCTCAAGGAGCAACAATGAGTTTGGCCTTGTCACTTCTGATTCCTTGCTTAACCCTTCACATAAAAGAAAGGATTATGAGTCCCAACAACAACATCCCCTAAGGCACTTCATTGATGACTCTCCCAAACCAGAGTCTCATCACCACCACCATCACCATCATCTCTCTGGCGTTTGGCCTGAGCTTGACATGCAGCCAGACAAGACTCAGTTATCAATCTCCATACCAATATCCTCCTCAGACTTCATGTCATTCACCACTTCCTCACCCTCCAATGAGAAACTCACATTGTCACCACTGAGGCTTTCAAGGGAGTTAGACTTGGACCCCATCCAAATGGGGTTGGGAGTGGGAAGTGCTCCCAATGAATCAAACATTAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCTATGGAAGGCCCTCTCGGAGAGGTTTTGAACCTTAGTAATTGTAGCAACAATAACAACAATGCAAGTGATCAATGTGGTGGCAATAACATCACTTCAGCCCTCAACCTCATGAAAGATGGGTGGGACAATAGTCCTCCACTAGGGTCATCCCCAACTGGGGTGCTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGAGAGCAGTCCAAGGTCAGAGAACAACAAAGAAGGAGCCACCACCTTGTGCAATGCCTTGTAA 1749 0.4706 MDLGVMGLEGLDSVASFGCSSLASDPEAKHKWYGSGVLKQERTVTSEDDGDEWRASKVAKTHDMSSASSKAMLFHHRNSLLRSNAATLFSDHHHSQMLSFSSPKSETLLLDNKPSSNATLPFSLSSNYNRSTGYNSGSNSMHGALVGAIGLFTPSQWMELEHQALIYKYITANVPVPSHLLIPIRKALDSASFCNFSTGLLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALNTTTTPNASSNSIVVPGNNTTTFAHSSSANTINRMFVSNKENNNASERMPDGPALPMLPPTLELKPKENNPFMIYKHQIPSYDESSSRSNNEFGLVTSDSLLNPSHKRKDYESQQQHPLRHFIDDSPKPESHHHHHHHHLSGVWPELDMQPDKTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLRLSRELDLDPIQMGLGVGSAPNESNIRQANWIPITWESSMEGPLGEVLNLSNCSNNNNNASDQCGGNNITSALNLMKDGWDNSPPLGSSPTGVLQKTAFGSLSNSSAESSPRSENNKEGATTLCNAL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00891 582 ProSiteProfiles WRC domain profile. 220 264 IPR014977 -
Cca05g00891 582 PANTHER - 24 573 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca05g00891 582 MobiDBLite consensus disorder prediction 535 582 - -
Cca05g00891 582 MobiDBLite consensus disorder prediction 373 401 - -
Cca05g00891 582 Pfam QLQ 152 185 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca05g00891 582 MobiDBLite consensus disorder prediction 367 412 - -
Cca05g00891 582 Pfam WRC 221 263 IPR014977 -
Cca05g00891 582 PANTHER GROWTH-REGULATING FACTOR 9 24 573 - -
Cca05g00891 582 MobiDBLite consensus disorder prediction 248 284 - -
Cca05g00891 582 SMART QLQ_2 150 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca05g00891 582 MobiDBLite consensus disorder prediction 539 582 - -
Cca05g00891 582 ProSiteProfiles QLQ domain profile. 151 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca05g00891 582 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00891 Cca-Chr5 24073680 24078593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00891 1 555 GRF Transcription Factor Family AT2G22840 41.338 1.85e-101 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca05g00891 WRC 5.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00891 - - ccaj:109815749 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00891 05 24073680 24078593 Cca05g00891 05 24073680 24078593 ECH