Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00886 ATGAAGTCCATGAATGATAGCAACACCGATGATGGCAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAGTCACTTCTTCTTCTTCTGCTATCCATCCCCATCATTATCATAACTACTATCATCACCCTCAAACTTCTGCTTGCAACACTGTTCCCACTAACTTCTACATGTCACCTTCACACCCCAACACATCAGGAATCTGCTATGGTGTTGGAGACAACAACAGTGCTTTTCACTCTCCCTTGGCCATGATGCCTCTCAAGTCTGATGGCTCACTTTGCATTATGGAAGCCCTCACCAGATCACAATCCCAAGTGATGGTGCCAACTTCATCTCCAAAGCTTGAGGACTTTCTAGGTGGTGCAACTATGGGGGGTCAAGACTATGGAGGGCATGGAAGAGAAGCAATGGCTCTAAGCCTTGACAGCATCTACTATAGTAACCAAAATGCCGAAGCTGAAACCAACAGAGACCATTCTTCTTCTTTGGACCTTCTTTCTGACCCTTTTAGGCACCAAACCCATCCATATTACTCGGGGCTTGGGATTTACCAAGTGGAGGAAGAAGCCAAGGAACCCCAAATGCCTCAAGTGGTGGAAGAAGGCATTGCTTGCTTCAACAACTGGGTGCCACCAAGGGAATATTCTTCTTCTCAGCAGAATCTGGAGCAGCATCAAGTGAATAATAGTAGTGGTGGACTTGTGGAGGATCATGGTGCTTCTGGGGGGAATGGTGGTGTTGGCACAGTGGAGTGTGGGGAGTTACAATCTTTAAGCCTGTCTATGAGCCCCGGCTCTCAATCAAGTTGTATCACTGTTCCAACTCAGATCTCATCTTCTAATACTGAATCTGTGACTGTGGAGGCCAAAAAGAGAGGGTCTGGTAAGCTTGGTCATAAGCAACCTGTGCATAGGAAGTCCATTGACACATTTGGGCAGAGAACTTCGCAGTATAGAGGTGTTACAAGGCACAGATGGACTGGTAGATATGAAGCGCATTTGTGGGACAACAGTTGCAAGAAAGAAGGACAAACTAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAAAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGTCCTTCAACTCACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGAGTAGGCAGGAATATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCTTCAATGTACAGAGGAGTGACAAGGCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGCACTCAAGAAGAAGCAGCTGAAGCATATGATGTAGCAGCAATAAAATTTCGTGGGGTGAATGCTGTGACAAACTTTGACATATCAAGGTACGATGTGGAGAGGATCATGGCCAGCAACACCCTTCTCGCGGGAGAGTTGGCAAGAAGGAACAAAGAAAGTGAGCCAAGGACTGAGGCCATAGAGTACAATGTTGTGTCAAGCCAACAGCAACAAGTAATGAACAAGGAAGAGGTTGAAGCTGTGAACAAGCACGCCAATGAAAATGGTTCATCATCGGATTGGAAGATGGTTTTGTATCATGATCAGCAACAGTCAAACAACTGTGACCCAAAACCCATGAAATGTGGAAATTATAGGGGTTCTGGTTTCTCAGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCATGCGATGCTAGAGGACTCTACTAAGATAGGGACTCATTTTTCAAACCCCTCTTCGATGGTGACAAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGATAAAACGGGCCCCACTATGCTCTTTCCAAAGCCTCCAATTGGGTCCAAGATTGTCACTAGCCCTATTTCTAATGCTGGCCCTTGGTTTCCCTCTCAAATTAGGCCACTCTCAATGTCTCATTTGCCAGTTTTTGCTGCTTGGAGTGATTCCTAG 2040 0.4574 MKSMNDSNTDDGNNHNWLGFSLSPHMKMEVTSSSSAIHPHHYHNYYHHPQTSACNTVPTNFYMSPSHPNTSGICYGVGDNNSAFHSPLAMMPLKSDGSLCIMEALTRSQSQVMVPTSSPKLEDFLGGATMGGQDYGGHGREAMALSLDSIYYSNQNAEAETNRDHSSSLDLLSDPFRHQTHPYYSGLGIYQVEEEAKEPQMPQVVEEGIACFNNWVPPREYSSSQQNLEQHQVNNSSGGLVEDHGASGGNGGVGTVECGELQSLSLSMSPGSQSSCITVPTQISSSNTESVTVEAKKRGSGKLGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAIEYNVVSSQQQQVMNKEEVEAVNKHANENGSSSDWKMVLYHDQQQSNNCDPKPMKCGNYRGSGFSVSLQDLIGIDSVGSSHAMLEDSTKIGTHFSNPSSMVTSLSSSREGSPDKTGPTMLFPKPPIGSKIVTSPISNAGPWFPSQIRPLSMSHLPVFAAWSDS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00886 679 CDD AP2 322 389 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 MobiDBLite consensus disorder prediction 610 635 - -
Cca05g00886 679 PRINTS Ethylene responsive element binding protein signature 324 335 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 PRINTS Ethylene responsive element binding protein signature 465 485 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 SMART rav1_2 425 489 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 SMART rav1_2 323 395 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 MobiDBLite consensus disorder prediction 288 310 - -
Cca05g00886 679 CDD AP2 424 485 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 677 - -
Cca05g00886 679 MobiDBLite consensus disorder prediction 220 254 - -
Cca05g00886 679 ProSiteProfiles AP2/ERF domain profile. 323 389 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 677 - -
Cca05g00886 679 Pfam AP2 domain 323 381 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 Pfam AP2 domain 426 475 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 Gene3D AP2/ERF domain 322 391 IPR036955 GO:0003700|GO:0006355
Cca05g00886 679 Gene3D AP2/ERF domain 425 485 IPR036955 GO:0003700|GO:0006355
Cca05g00886 679 SUPERFAMILY DNA-binding domain 424 485 IPR016177 GO:0003677
Cca05g00886 679 MobiDBLite consensus disorder prediction 610 629 - -
Cca05g00886 679 MobiDBLite consensus disorder prediction 220 241 - -
Cca05g00886 679 ProSiteProfiles AP2/ERF domain profile. 425 483 IPR001471 GO:0003700|GO:0006355
Cca05g00886 679 SUPERFAMILY DNA-binding domain 322 391 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00886 Cca-Chr5 23948645 23953557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00886 264 505 AP2-EREBP Transcription Factor Family AT1G72570 74.074 1.88e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca05g00886 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00886 K09285 - gmx:100798179 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00886 05 23948645 23953557 Cca05g00886 05 23948645 23953557 ECH
Cca05g00886 05 23948645 23953557 Cca03g01771 03 36857318 36861271 PCT