Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00884 ATGGGGGGTCAGGAGAATGCCATGGGGTTTCAACATGGAAATAAGAGCATTCTGACTTGTCCAACTTCAGGTCTCAGTGGTGCAAATATTAATGTTTCAGAAATGGCTATTAGTTCTGTTTCTATGGCCAAGCCTTCTTCAGATGTAGCTAACAACCCTTTTCTTGCTTCATCCGCTTGGGATCCACTTGTTTCCTTGAGCCAGGCTCAAACTTTTGGAGGCTCTTCAATGGTTTCTCATACTGAGTTTGCCAATGCCAACTCATCTTACCCTCTTGTTTTGGAAAACCAGGGAATAAGCAGCACTTCCCACCTTGTTCAATACATGTCTGAGTCAAATCTTGGGGGCATGGTCCCCAAGGTTCACTCTTATCAAAGTGGAGGCTTCTCCGAGATGGTTGGTGGTGCCTCTTTTGGCCAACATGGGTCTGGTGACATGGCTAACACAGGTTATCCAACACATTATAATCAGATCAAGGAGGCTATAACTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGATGAAGCACCCGGATCTGCCCCTAGTGGGAATAGAAGAAAAAGAGGGCTTGATCATAATTCTACCTTCAGTCCAAATAAGAATGCTGAGAGTGATGCTGTGAGAGATTCTCCTGGGAAGACCTCTGATGGTCCAAAAGAACATGAAAAGAAACTAAAAGTTGAGCAGAATAATGGTGCAGATATGCGTGGTAAGCAATCAGTGAAGCAAGCTAAAGACAACAATTCTCAGAGTGGAGAAGCTCCGAAAGATAATTTCATTCACGTGAGAGCTAGGAGAGGTCAAGCTACAAATAGCCACAGCCTTGCAGAACGGGTTAGAAGGGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCTGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTCTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGATATTCTCCAATCACGCATAGGTCATGGAATTGGTGCATATGGTCCTGGAATTAATTCTTCTCACACATTCCCCAATGGAAGTTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCACGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATGCAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1296 0.4398 MGGQENAMGFQHGNKSILTCPTSGLSGANINVSEMAISSVSMAKPSSDVANNPFLASSAWDPLVSLSQAQTFGGSSMVSHTEFANANSSYPLVLENQGISSTSHLVQYMSESNLGGMVPKVHSYQSGGFSEMVGGASFGQHGSGDMANTGYPTHYNQIKEAITNGEQSQVEDSIPEDEAPGSAPSGNRRKRGLDHNSTFSPNKNAESDAVRDSPGKTSDGPKEHEKKLKVEQNNGADMRGKQSVKQAKDNNSQSGEAPKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGIGAYGPGINSSHTFPNGSFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNAALDNLGPNGRLKTEL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00884 431 Pfam Helix-loop-helix DNA-binding domain 274 322 IPR011598 GO:0046983
Cca05g00884 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983
Cca05g00884 431 CDD bHLH_AtBPE_like 261 346 - -
Cca05g00884 431 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 431 - -
Cca05g00884 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 339 IPR036638 GO:0046983
Cca05g00884 431 SMART finulus 277 327 IPR011598 GO:0046983
Cca05g00884 431 MobiDBLite consensus disorder prediction 165 262 - -
Cca05g00884 431 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 431 IPR024097 GO:0006355
Cca05g00884 431 Gene3D - 268 342 IPR036638 GO:0046983
Cca05g00884 431 MobiDBLite consensus disorder prediction 209 234 - -
Cca05g00884 431 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00884 Cca-Chr5 23888725 23892758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00884 1 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.535 9.79e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g00884 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00884 - - gmx:100801930 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00884 05 23888725 23892758 Cca05g00884 05 23888725 23892758 ECH