Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00881 ATGGTGGATCCCTACGTCCTCGGCTGGATTCTGTGCTCCGTTCTCACTCTCTTCGCGCTCCACAGTTTGGCTTTCCGCGGAACCAGCCGCCGCGCTTCGCCGGAGAACAGGAACGACTTCTCGGAGACCGTCACCACCACCGCCGGAGAATGCAGATCGGGAAACCGCAACAGCGACGCTGACGTCATCATTGTCGGTGCCGGCGTCGCCGGCGCTGCTCTGGCGTACACTCTCGGCAAGGATGGACGTCGAGTACATGTCATTGAAAGAGATCTGAGTGAACCTGACCGAATTGTTGGAGAATTGCTACAACCCGGGGGATATCTCAAATTAATTGAGCTTGGACTTGAAGATTGTGTGGACAAAATTGATGCTCAACAAGTGTTTGGCTATGCCCTTTTCAAGGATGGGAAGCATACTCGTCTCTCTTATCCCTTGGAGAAGTTTCACTCAGATATCTCTGGGAGAAGCTTTCACAATGGGCGCTTTATTCAGAGGATGCGGGAGAAGGCCGCCTCACTTACCAATGTACGATTGGAGCAAGGAACAGTCACTTCCCTAGTTGAAGAGAAGGGTGCAATTAAAGGTGTGCAATATAAGTCCAAAGATGGTCAGGCATTGACAGCGTATGCACCACTTACCATTGTTTGTGATGGTTGCTTCTCAAACTTACGTCGTTCTCTTTGTAATCCTAAGGTAGATGTTCCCTCATGTTTTGTTGGTTTAGTTTTAGAAAACTGTGAACTTCCATGTGCCAATCATGGCCACGTTATTCTGGGAGATCCTTCCCCAATCCTATTCTATCCTATAAGCAGTACAGAGGTTCGCTGTCTGGTCGATGTACCTGGTCAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGAAAAGTATTTGAAGACAACAGTGGCTCCCCAGATTCCCCCCCAGCTTTATGATTCTTTCATAGCTGCTGTGGACAAAGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGGCATCCACTAACAGGGGGTGGAATGACTGTAGCATTGTCTGATATTGTGGTGCTGAGAAATCTTCTAAGACCCTTGTCTGACCTGAATGACGCACCCACACTCTGCAAATACCTCGAATCGTTTTATACCTTGCGTAAGCCTGTGGCATCTACCATAAATACACTGGCAGGGGCTCTTTATAAAGTTTTTTGTGCATCCCCTGATCAGGCGAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCCTTGGAGGCCTATTCTCGGAAGGACCAGTTTCTCTACTTTCTGGATTAAACCCTCGTCCCTTGAGCTTGGTTCTCCATTTTTTCGCTGTTGCAATATTTGGTGTTGGACGTTTATTGTTACCATTTCCTTCACCTAAGCGAGTATGGATTGGAGCCCGATTAATCTCTGGTGCATCTGCAATCATCTTGCCAATAATTAAGGCTGAAGGGATTCGTCAAATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAAGTCCCCCGGTGTCACAATAG 1578 0.4778 MVDPYVLGWILCSVLTLFALHSLAFRGTSRRASPENRNDFSETVTTTAGECRSGNRNSDADVIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDISGRSFHNGRFIQRMREKAASLTNVRLEQGTVTSLVEEKGAIKGVQYKSKDGQALTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMEKYLKTTVAPQIPPQLYDSFIAAVDKGNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLSDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIFGVGRLLLPFPSPKRVWIGARLISGASAIILPIIKAEGIRQMFFPATVPAYYRSPPVSQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00881 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 525 - -
Cca05g00881 525 SUPERFAMILY FAD/NAD(P)-binding domain 60 434 IPR036188 -
Cca05g00881 525 MobiDBLite consensus disorder prediction 30 52 - -
Cca05g00881 525 Pfam Squalene epoxidase 211 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Cca05g00881 525 PANTHER SQUALENE MONOOXYGENASE 1 525 IPR040125 GO:0004506|GO:0016126
Cca05g00881 525 Gene3D - 53 434 IPR036188 -
Cca05g00881 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Cca05g00881 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Cca05g00881 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Cca05g00881 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Cca05g00881 525 MobiDBLite consensus disorder prediction 38 52 - -
Cca05g00881 525 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00881 Cca-Chr5 23857999 23862497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00881 37 522 Miscellaneous Gene Families AT1G58440 79.508 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00881 K00511 - gmx:100804406 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00881 05 23857999 23862497 Cca05g00881 05 23857999 23862497 ECH
Cca05g00881 05 23857999 23862497 Cca03g01767 03 36812728 36817147 PCT