Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00880 ATGAACAAAGACGAAGGCGATCGGAGCGAAAACAAAGCGGAAGATATCAAGCTTTGGGGAGTTTTCCTCTTCGGATTAGTCGGCGCCGCCGTCACCGCCTTCTCCCTGTCCAGGTCGCAGTTGAAAGGAGGGAATAGCAGTTCTTTCCGATCTACATTTCAAGAAGAAGCGTGGAAGAGGTACAATAAGCGACTGCAAGAAGAATATGAGGAGGAGATGGAGAGAGTGGAACGAATAAGGCGTATGCAAAGTGTGTTTAATAGAGAAAGGGATAAGCAAAGAAAAAGCTATGAGAGCTGGAGGGCAAATGGTTCTGGTGCATATCATCAGCATTTCCAAAGAGATGATTGGTATTGGAAGGCGGAAGCATCCTTCAGAGAGCAGTGGGCCAATCATCAACATACTCCTAGAGAGAGCGGAAACTATGCGTTATCACATCACTACTCAGTTTTGGGTCTTGACAGGTTTAGAACAGCTCCATATACAGATGCGGAGATTAAGACAGCATTTAGGACCAAGGCAAAGCAGTATCATCCTGATCAGAACCAGGATAATAGAGAAGCTTCTGAGGCCAAGTTCAAAGAAGTAATTTGTTCATATGAGGCCATACAACAGGAAAGAAAGAACCAGAATCTGTAA 639 0.4476 MNKDEGDRSENKAEDIKLWGVFLFGLVGAAVTAFSLSRSQLKGGNSSSFRSTFQEEAWKRYNKRLQEEYEEEMERVERIRRMQSVFNRERDKQRKSYESWRANGSGAYHQHFQRDDWYWKAEASFREQWANHQHTPRESGNYALSHHYSVLGLDRFRTAPYTDAEIKTAFRTKAKQYHPDQNQDNREASEAKFKEVICSYEAIQQERKNQNL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00880 212 Pfam DnaJ domain 147 210 IPR001623 -
Cca05g00880 212 PANTHER HEAT SHOCK PROTEIN-BINDING PROTEIN 4 212 - -
Cca05g00880 212 Gene3D DnaJ domain 140 212 IPR036869 -
Cca05g00880 212 SUPERFAMILY Chaperone J-domain 145 210 IPR036869 -
Cca05g00880 212 SMART dnaj_3 145 208 IPR001623 -
Cca05g00880 212 PRINTS DnaJ domain signature 170 185 IPR001623 -
Cca05g00880 212 PRINTS DnaJ domain signature 188 208 IPR001623 -
Cca05g00880 212 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 212 - -
Cca05g00880 212 CDD DnaJ 147 196 IPR001623 -
Cca05g00880 212 Coils Coil 55 82 - -
Cca05g00880 212 ProSiteProfiles dnaJ domain profile. 146 208 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00880 Cca-Chr5 23848929 23853500 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00880 - - gmx:100804936 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00880 05 23848929 23853500 Cca05g00880 05 23848929 23853500 ECH
Cca05g00880 05 23848929 23853500 Cca03g01766 03 36806174 36811990 PCT