Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00875 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGACCATGGTCTCCAGAAGAAGATGCTAAGCTCAAATCTTACATAGAAAAACATGGCACCGGTGGTAACTGGATTGCTTTGCCTCAAAAGATTGGCTTGAAGCGATGTGGCAAGAGTTGCCGCCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAAGCACGGTGGTTTTTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTCAGCATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAATTACCAGGAAGAACAGATAATGACATAAAGAACTACTGGAACACGAGGCTTAAAAAGAAGCTTCTGGGGAAGCACCGAAGAGAGCCACGTAATAGAGGCAACTACAACAGTATTATCAAGCAAGAAAGTGATGTTAATAGACGGAGTAGTACTGATGGTGATTCTTCATCCTTATCCTTGGTTCATGAAAATAATAGTACTACACAACAATGTTGGCCCCAGAATATTAATATGCCTGTGCTGccactacccttaacattaccattacccttgccatatacAGACCATGGTCCATGTTTCAACGACCAAGATTCTATCAGAAAACTCCTCATCAAACTCGGAGGCAGATTTTCAGGTGATTATTACCATCCTGCCCTTGATGGCTTGAATCTTGAACTCTCAGATGGGCAACAAAGTTTTCAAGATCAACAACTCCATGTTGGTTCTTCTTCTTCTTCTGTTTGCACTACCACCACTGTTAACATTAGCAATAATGAGGTTCAATTTGCACAAAGTGGTGATCAATGTCAATACTTTAGTGCACAGGGTTCTGGAGTTAACACCTTGTTGCAAGGACATGGTAGTAATTTCACTCCATCAATTGAAGAACTAGTGCCTTCTTCAAATTTTCCACAAGGGTTGGAGTTCTTGTACGGAGAGGGCATGATCGACCATAATAAGATAATAGAATCTACCACAAATTGGGGTGAAACTAGCACTTCCATTTATCATCATAATTCTCTTGCTTCAAATTGTCAAGGTTTGGAAGAGTTTAGCTACCCCGGGGAGCAATGA 1083 0.4063 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSIIKQESDVNRRSSTDGDSSSLSLVHENNSTTQQCWPQNINMPVLPLPLTLPLPLPYTDHGPCFNDQDSIRKLLIKLGGRFSGDYYHPALDGLNLELSDGQQSFQDQQLHVGSSSSSVCTTTTVNISNNEVQFAQSGDQCQYFSAQGSGVNTLLQGHGSNFTPSIEELVPSSNFPQGLEFLYGEGMIDHNKIIESTTNWGETSTSIYHHNSLASNCQGLEEFSYPGEQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00875 360 CDD SANT 71 113 IPR001005 -
Cca05g00875 360 SMART sant 13 64 IPR001005 -
Cca05g00875 360 SMART sant 67 115 IPR001005 -
Cca05g00875 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca05g00875 360 Gene3D - 69 146 - -
Cca05g00875 360 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca05g00875 360 PANTHER OS09G0431300 PROTEIN 1 338 - -
Cca05g00875 360 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 338 - -
Cca05g00875 360 CDD SANT 16 62 IPR001005 -
Cca05g00875 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cca05g00875 360 MobiDBLite consensus disorder prediction 130 156 - -
Cca05g00875 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca05g00875 360 Gene3D - 7 68 - -
Cca05g00875 360 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca05g00875 360 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca05g00875 360 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca05g00875 360 MobiDBLite consensus disorder prediction 119 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00875 Cca-Chr5 23758607 23760948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00875 1 208 MYB Transcription Factor Family AT3G49690 60.190 3.49e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00875 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00875 K09422 - gmx:100800290 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00875 05 23758607 23760948 Cca05g00875 05 23758607 23760948 ECH
Cca05g00875 05 23758607 23760948 Cca03g01761 03 36741138 36743050 PCT