Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00872 ATGGAGGAATACACTAATAATAATAATCACCTGAGTGAAAACACAGGTCCAAGGCCAAGTCCAAGGCCAAATTTCTTGTACTCTTCATCAAGTGGTGGAAACCAAAACCAAAACCAAAGccaccaccaccaccaccaccaccaccaccaGCAGTTTCCTATCAACACCTTTCATCTTCAATCGGGTGGATCAGATCATTGCTTTCATGAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCACCACTTCGAAGCTTCACGCCCCGATTTTCCACTACCCTTTAATGAGAGCAAatcttcacaacaacactatgcatcatcatcatcatcatcaAGGAGGAGCTAGCCCAACAAGCTCCACCACCGAAGTTGAAGTCATAAAAGCTAAAATCATTGCTCACCCTCAATACTCCAATCTTTTAGAAGCTTACATGGATTGCCAAAAGATAGGAGCTCCACCAGAAGCAGTGGCGCGTATGGTTGCGGCGAAGCAAGAGTTTGAGGCACGGCAACGTTCTTCAGTTGGATCAAGGGAAACTTCTAAAGACCCTGAACTTGACCAGTTCATGGAGGCTTACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACGAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTTCGGATCTTCTCTGAGGATCAAGACAATAGTGGAGGAGAAACAGAACTTCCCGAGATTGATCCTAGAGCAGAAGATCGTGAACTTAAAACCCACTTGCTGAGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCTAAGAAGAAAAAGAAAGGGAAACTTCCCAAAGATGCTAGACAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCACTGGCTGAATCAACTGGTTTAGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAGTTCATGGTGATGGATGGCTTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1137 0.4151 MEEYTNNNNHLSENTGPRPSPRPNFLYSSSSGGNQNQNQSHHHHHHHHHQQFPINTFHLQSGGSDHCFHESDQVAPHPSVKTEATTSKLHAPIFHYPLMRANLHNNTMHHHHHHQGGASPTSSTTEVEVIKAKIIAHPQYSNLLEAYMDCQKIGAPPEAVARMVAAKQEFEARQRSSVGSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEDQDNSGGETELPEIDPRAEDRELKTHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00872 378 Pfam KNOX2 domain 183 229 IPR005541 GO:0003677|GO:0005634
Cca05g00872 378 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Cca05g00872 378 Pfam ELK domain 260 281 IPR005539 GO:0003677
Cca05g00872 378 ProSitePatterns 'Homeobox' domain signature. 318 341 IPR017970 GO:0000981|GO:0006355
Cca05g00872 378 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Cca05g00872 378 MobiDBLite consensus disorder prediction 1 84 - -
Cca05g00872 378 MobiDBLite consensus disorder prediction 1 38 - -
Cca05g00872 378 Gene3D - 285 347 - -
Cca05g00872 378 SMART KNOX2_2 179 230 IPR005541 GO:0003677|GO:0005634
Cca05g00872 378 CDD homeodomain 292 344 IPR001356 GO:0003677
Cca05g00872 378 SUPERFAMILY Homeodomain-like 281 356 IPR009057 -
Cca05g00872 378 SMART KNOX1_2 128 172 IPR005540 GO:0003677|GO:0005634
Cca05g00872 378 SMART HOX_1 282 347 IPR001356 GO:0003677
Cca05g00872 378 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 370 - -
Cca05g00872 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 370 - -
Cca05g00872 378 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Cca05g00872 378 Pfam KNOX1 domain 130 171 IPR005540 GO:0003677|GO:0005634
Cca05g00872 378 SMART ELK_2 260 281 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00872 Cca-Chr5 23601902 23607970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00872 64 378 Homeobox Transcription Factor Family AT4G08150 66.866 2.90e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca05g00872 KNOX2 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00872 - - gmx:100807602 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00872 05 23601902 23607970 Cca05g00872 05 23601902 23607970 ECH