Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00871 ATGGCAGGAAACTCCTCTGATCCAAGTGGCAACAAGACTGCTAATATTTTAATTAATCATGACTTCTGTAGTGGGCTGAACTCATGGCATCTCAATAACTGCAATGGCTATGTAATTTCAGCTGAAACAGGTACTCAAGGAGGAACTTCAATGAAGTCTGATGGCAATTATGCTGTTATTACTGACCGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGACAGAATTTCCATTGGTTCCACTTACACAGTTTCGGCTTGTGTGGGTGTATCCGGGCTTTCTCAGGGACACAGTGATGTTCTAGCTACTCTGAAACTAGAATATCACAATTCAGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAAGATAGCTGGGAAAAGTTGGAAGGGACATTCTCATTGTCAACAATGCCTGATCGGGTTATATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTGCTTATACGATCAGTAGAGATCAACTGTTCCAGTTCAAACAATAATGCCACAAGCACAGGATGTGTTTCAGCTGGAGATGACAATATCATCATTAACCCCCAATTTGATGATGGCCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTATGTTGCACGATTCCATGAATGGTGGGAAAATTGTTCCCAAGTCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATTCAGCAAGAGATCACTGGACGCGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTAGAATATTTGGAAACAATGTCTCTACTGCTGATGTACGGGCTACTTTGTGGGTCCAAACACCGGATCTTCGAGAGCAATATATAGGCATTGCAAGTGTGCAGGCAACAGATAAAGATTGGGTTACAATGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCAAAAGTAGTCCTTTATTTGGAAGGGCCCCCTCCAAGCACTGACATTCTTCTGAATAATTTGGTTTTAAAGCATGCAGCTAAAACACCTCCTTCAACCCCACCTGATGTAAAGAATGTTGCTTTTGGTGTTAATATAATTGAGAACAGCAGTCTGGCTGATAACACCAATGGTTGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAACTGGCTCTCCACATATAATTCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGAACTCCTAAGTGGGCGCTACATCCTTGTAACTAATCGAACACAGACATGGATGGGTCCTGCTCAGGTAATCACTGATAAAGTGAAACTATTTGTGACTTATCAAGTGTCTGCTTGGGTCCGGATTCGCTCAGGAGCATCAGGGCCACAGAATGTGAATGTTGCCCTTGGTGTGGACAATCAGTGGGTCAATGGAGGACAAACTGAGGTTTATGATGACATGTGGCATGAAATTGGTGGATCTTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTAGCTGGACTTCAAATTTTTCCCGTGGATAGACATGCAAGATTTAGATATTTAAAGATCCAAACAGATAAGATCCGTAAACGTGATGTTATCCTGAAATTCTCTGGGCTGGACTCTGGCAGCTATGCTAACACCTCAGTTCAAGTTAGACAAACACAGAATGATTTCCCAATTGGATCATGCATCAGTAGAACAAACATTGACAATGAAGACTTTGTTGACTTCATGGCGAAGCATTTTAACTGGGCTGTGTTTGGAAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTGAATTACAAGGATGCTGATGATCTGTTAACCTTGTGTCAGAAGCACAAGATACAAACTAGAGGTCATTGTATCTTCTGGGAAGTGGATGGAACCGTTCAGCAGTGGGTCAAATCACTGAACAACAATGACTTGATGACGGCAGTCCAAAACCGCTTAAACGGCCTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTTAACAACGAAATGCTGCATGGTTCATTCTACCAAGACAGGCTAGGAAAGGATATAAGGGCAAACATGTTCAAGACTGCAAACCAACTAGACCCTTCTGCTACATTGTTTGTGAATGATTACCATGTTGAAGACGGATGCGACACCAAATCATGTCCAGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGGGGAATTGGAATTCAAGGCCACATAGACAGTCCAATAGGGCCTGTTGTTTCTTCTTCACTTGACAAGTTAGGTGTTCTTGGCCTACCTATATGGTTTACTGAGCTTGATGTGTCTTCCATCAATGAATATGTTAGAGGAGATGATCTCGAAGTTATGCTACGTGAAGCAATGGCTCATCCTGCTGTGGAAGGCATAATGCTGTGGGGATTTTGGGAGTTGTTTATGAGTAGGGACAATGCACACTTGGTGAATGCTGAAGGTGACATCAATGAAGCTGGGAAAAGGTTCTTAGCTCTGAAGCAAGAGTGGCTGTCTCACAGCCGTGGCCATGTTGATGAGCAAGGTCAATACAACTTCAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACCCCAACAAAGAAGATTTCCAAGACATTTGTGCTTGACAAAGGTGACTCGCCACTTGTGGTATCCATTGATTTATAA 2706 0.429 MAGNSSDPSGNKTANILINHDFCSGLNSWHLNNCNGYVISAETGTQGGTSMKSDGNYAVITDRKECWQGLEQDITDRISIGSTYTVSACVGVSGLSQGHSDVLATLKLEYHNSATSYLFIGRTSVNKDSWEKLEGTFSLSTMPDRVIFYLEGPAPGVDLLIRSVEINCSSSNNNATSTGCVSAGDDNIIINPQFDDGLNNWSGRGCKIMLHDSMNGGKIVPKSGKFFASATERTQNWNGIQQEITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQTPDLREQYIGIASVQATDKDWVTMQGKFLLNGSPSKVVLYLEGPPPSTDILLNNLVLKHAAKTPPSTPPDVKNVAFGVNIIENSSLADNTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRTQTWMGPAQVITDKVKLFVTYQVSAWVRIRSGASGPQNVNVALGVDNQWVNGGQTEVYDDMWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHARFRYLKIQTDKIRKRDVILKFSGLDSGSYANTSVQVRQTQNDFPIGSCISRTNIDNEDFVDFMAKHFNWAVFGNELKWYWTEPQQGNLNYKDADDLLTLCQKHKIQTRGHCIFWEVDGTVQQWVKSLNNNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTKSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPVVSSSLDKLGVLGLPIWFTELDVSSINEYVRGDDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPTKKISKTFVLDKGDSPLVVSIDL 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00871 901 Pfam Carbohydrate binding domain 358 501 IPR003305 GO:0016798
Cca05g00871 901 Pfam Carbohydrate binding domain 14 155 IPR003305 GO:0016798
Cca05g00871 901 Pfam Carbohydrate binding domain 186 325 IPR003305 GO:0016798
Cca05g00871 901 PANTHER GLYCOSYL HYDROLASE 14 165 IPR044846 GO:0004553|GO:0005975
Cca05g00871 901 PANTHER GLYCOSYL HYDROLASE 176 901 IPR044846 GO:0004553|GO:0005975
Cca05g00871 901 Pfam Glycosyl hydrolase family 10 558 815 IPR001000 GO:0004553|GO:0005975
Cca05g00871 901 SUPERFAMILY Galactose-binding domain-like 356 516 IPR008979 -
Cca05g00871 901 Gene3D - 354 513 - -
Cca05g00871 901 Gene3D - 9 168 - -
Cca05g00871 901 Gene3D - 181 339 - -
Cca05g00871 901 Gene3D Glycosidases 547 857 - -
Cca05g00871 901 SMART glyco_10 595 845 IPR001000 GO:0004553|GO:0005975
Cca05g00871 901 SUPERFAMILY Galactose-binding domain-like 14 168 IPR008979 -
Cca05g00871 901 PRINTS Glycosyl hydrolase family 10 signature 626 638 IPR001000 GO:0004553|GO:0005975
Cca05g00871 901 PRINTS Glycosyl hydrolase family 10 signature 708 719 IPR001000 GO:0004553|GO:0005975
Cca05g00871 901 PRINTS Glycosyl hydrolase family 10 signature 740 752 IPR001000 GO:0004553|GO:0005975
Cca05g00871 901 PANTHER - 14 165 - -
Cca05g00871 901 PANTHER - 176 901 - -
Cca05g00871 901 SUPERFAMILY Galactose-binding domain-like 185 339 IPR008979 -
Cca05g00871 901 SUPERFAMILY (Trans)glycosidases 549 852 IPR017853 -
Cca05g00871 901 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 549 844 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00871 Cca-Chr5 23554856 23560628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00871 10 901 Glycoside Hydrolase AT1G58370 69.050 0.0 1316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00871 - - gmx:100818319 1706.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00871 05 23554856 23560628 Cca05g00871 05 23554856 23560628 ECH
Cca05g00871 05 23554856 23560628 Cca03g01757 03 36663540 36668601 PCT