Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00869 ATGTGGTTCCGCCGCGTCGGCCACCGCTCCGCGACGCAACGCAACGTAATAGTGAAAGATTCGTTGAATTTGGTTTGGAATCTGAAATTTCAATCGAATGCCATTGATATAGCCGCGATGTTGAATCATGTGAGCAATAATAATATCTGCTCATGGCTGTTGTTTGTAGTGAGGCACTACTCTAGAATTCGGCCTCCAAGGCCTGTTTCTGCTGAACCAGTAATCAGAGTTTCAAACAATATTGCTCGCTTGGATGCTCCCAAAGAAGGTCCAAAACCCAGACAGCTACTATCATTGCCGCCTTTTCCTGGTCATCCCTTGCCTGCCAAGAGCTCAATTAGTGGTCCTCGACTGCGTGATCATGTTACTGCTGTCAATTGGATTAAGTATTACTTCAAGGGCGCATGGGGTTCTGTCATTGAATCCCATTTCAGGGGGGGTCTTGTGCAAATGGAGGACTTTGTTGCTGATGACTCTTCCACTCAGAAAGAAGAGCTGAGGAAACCCATGCGAAAGATTAGACCTAATGAAGTGATGAAACGTGGTGTCAGAGTTCATGTTCCTGTATCTATTGCTGAGACTAGGATTTCCAAAAGATATGATGCTATTCCAAGTGGAACATTATATCCAAATGCTGATGAAATTAAGTATCTGCAAAGGCTTCTGATTTACAAGGACTCGGCTATTATTGTGCTAAATAAACCTCCAAAATTGCCGGTTAAGGGGAATTTGCCAGTTCATAATAGCATGGATGCATTGGCAGCTGCAGCATTGTCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAGAGAGAGCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGTTTCTCACCTACAATGGTTATTCAGTAACATTAACAATGCAAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGCTACGTATCAGAGGTATTGGGCATTAGTCATAGGAACTCCCAAGGAGAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTACTTCTAAATGATGGGAAGACTGAGAGGGTAATACTAGCTCACCATTCAAGTGTAGAACCTCGCCAAGAGGCTGTAACTGAGTATCGGGTGCTTGGTCCAAAAATAAATGGATGCTCATGGGTTGAGCTGCGTCCACTTACTTACCGAAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACACCAATAGTGGGTGACTATAAGTATGGTTGGTTTGTGCACAGCCGATGGAAACAAATGCCGCGAGTTGATATTGAGCCAACAACTGGAAAACCATACAAGTTGCGGAGGCCAGAAGGCCTAGATGTTCAGAAGGGAAGTGTTTTATCGAAGGTTCCTCTGTTGCATCTTCACTGCAGAGAACTTGTACTCCCCAACATTGCTAAGTTTCTACATGTTTTGAAAAATAGTTCAGAAGAACTACACACTTCACTCCGTGAGCAGCCTGATGTTCTTCGCTTTGTGGCAACAATGCCTTCCCATATGAGAATTAGTTGGAATCTTATGTCATCTTATTTGGTCTGA 1557 0.438 MWFRRVGHRSATQRNVIVKDSLNLVWNLKFQSNAIDIAAMLNHVSNNNICSWLLFVVRHYSRIRPPRPVSAEPVIRVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSISGPRLRDHVTAVNWIKYYFKGAWGSVIESHFRGGLVQMEDFVADDSSTQKEELRKPMRKIRPNEVMKRGVRVHVPVSIAETRISKRYDAIPSGTLYPNADEIKYLQRLLIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHHSSVEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLKNSSEELHTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00869 518 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 51 515 - -
Cca05g00869 518 SUPERFAMILY Pseudouridine synthase 215 471 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca05g00869 518 Pfam RNA pseudouridylate synthase 229 400 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca05g00869 518 Gene3D Pseudouridine synthase 216 474 - -
Cca05g00869 518 CDD PseudoU_synth_RluA_like 229 425 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca05g00869 518 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 51 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00869 Cca-Chr5 23542306 23549857 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00869 - - gmx:100817786 905.205