Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00867 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAACGTTAAGAGAGGACCATGGTCTCCTGAAGAAGATGCAACCCTCAAAAGTTATGTTGAGACTCATGGCACTGGTGGAAATTGGATTGCATTGCCAAAAAAAGCTGGCCTTAGACGGTGTGGCAAGAGTTGCCGTCTACGGTGGCTAAATTATCTGAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAAGAGGACAACATCATTTGCACCCTCTATGCTCAGCTCGGAAGCAGATGGTCTGCCATAGCCTCTCAACTTCCTGGAAGAACCGACAATGATGTGAAAAACCACTGGAACACAAAACTGAAGAAGAAGATAATGTCAGGAGAAGTTAGTCTCAAAGCATTGACTAACAACGACCCTCTAATTCCTTCATCTCCAACCCCATCACTAACCCAAAATTCAGTTTTCCCTTCTTCACAAAATCAAAATTTTCTACCTCCCATGCTGTCAATCTTAGATGCTAATTCCGGGTTCAACAACGTTAATGAACAAAACATTAGTTTCGACCAAACTAATGGGTTGTATGGTCCACATGTCATGGATGTTGTCTCAGAAATTGGTGCAAGTTCAAGCATCAACAATAATATTAATCCCATGGTGTCATTGTCTGGAGAAGGTTCAAGTGTTTCGGATTCGTCTTCAATTGCAATGAACAACAACAAGGGTAGTGTGTCACAGCCACAACATGCTAGTGATGAATCTATGGAAATGATGGATTTTGGCTTTGGATTTCCCTATGATCTTGTCAATGGTCTTAACTGCCATTATGAGAGAGTTGGTGAGTTTCCTCCAAGTTGGTACCCAGAGTGGGTTGATTTTAGCTATGCCAACATTAAGCCACATTAA 882 0.424 MGRAPCCDKANVKRGPWSPEEDATLKSYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYAQLGSRWSAIASQLPGRTDNDVKNHWNTKLKKKIMSGEVSLKALTNNDPLIPSSPTPSLTQNSVFPSSQNQNFLPPMLSILDANSGFNNVNEQNISFDQTNGLYGPHVMDVVSEIGASSSINNNINPMVSLSGEGSSVSDSSSIAMNNNKGSVSQPQHASDESMEMMDFGFGFPYDLVNGLNCHYERVGEFPPSWYPEWVDFSYANIKPH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00867 293 CDD SANT 71 113 IPR001005 -
Cca05g00867 293 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca05g00867 293 Gene3D - 69 131 - -
Cca05g00867 293 Gene3D - 7 68 - -
Cca05g00867 293 PANTHER OS09G0431300 PROTEIN 1 203 - -
Cca05g00867 293 CDD SANT 16 62 IPR001005 -
Cca05g00867 293 PANTHER OS09G0431300 PROTEIN 1 203 - -
Cca05g00867 293 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca05g00867 293 SMART sant 67 115 IPR001005 -
Cca05g00867 293 SMART sant 13 64 IPR001005 -
Cca05g00867 293 MobiDBLite consensus disorder prediction 215 243 - -
Cca05g00867 293 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca05g00867 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca05g00867 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cca05g00867 293 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca05g00867 293 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00867 Cca-Chr5 23520152 23524558 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00867 1 121 MYB Transcription Factor Family AT3G49690 79.339 2.52e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00867 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00867 K09422 - gmx:100817747 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00867 05 23520152 23524558 Cca05g00867 05 23520152 23524558 ECH