Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00865 ATGGATTTCATGAAGGTCTTCGATCAAACCGTGCGAGAAATAAAGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAGCAGAAGGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGCGCTGGCAGAGATTGCACAGGCTACCAAAAAATTTACTGAATGTCAAATGGTCATGAATGTGCTATGGACAAGGCTGGGTGAAACCGGAAAAGATTGGCGTTATGTATACAAGGCATTAGCTGTTATAGAATATTTGGTATCACATGGATCTGAACGTGCAGTTGATGACATTATTGAACATACTTTTCAGATCTCGGCACTTTCTAGTTTTGAATATGTTGAGCCAAATGGGAAGGATGTGGGACTCAATGTAAGGAAGAAGGCAGAAAACATCGTGTCCCTGTTGAATGATAGAGATAAGATACATGATGTCAGAAATAAAGCTGCTGCAAACCGTGACAAGTATGTTGGAGTTTCTTCTAGTGGAATCACATATAAGTCTGGGTCATCCTCCTTTAGTAGTGGTGGCAGCTATCAGAGCAGTGGTAAATATGGAGGTTTTGGATCTAGAGACGGTGACAGGTTTAGTGATAGCTATAGAGACAAGGGATCCTATGAAGGAGAAAAAGATTACCATGAAAAATCACACCATGCCATTGATGAAGAGAACTCCTACAAGAAGGGTTCTGCACGCTCTGTCAGTAAAAGTCAAAGTCAGGAGAACATGTCCTCTAGAGTATCAAAGTCGTCGACAAATGCACATAATTATGGTTCTGTTCCTTCTCAAAGTTCAAGTGTACCTGCAAACAATACAGAGGATGACATGGATGATTTTGATCCTAGAGGAACTTCTACCAAAGCTTCAGCCGGAAACTCTAATCAGGTTGATCTCTATGGACAAGATTTAATTGGTGACCTCATGGATGCCCCAACGTCTGTTCCTGTAGAAAAGCCAGCAGCTAGTAATGTGCCGGAAGTTGATCTTTTTGCAGACGCAACATTTGTATCAGCTCCATCTCATGTGGACAAAGGAGCCAGTTCACAACCACAGGCTGAGGTGGATCTGTTTTCTTCACAACCAGCTATTCCTTCAGTTACACCAACAGTTGACTTGTTTTCCATTCCTGAACCGGCAGTGCAGCCAGACAGCAAGACAGAGAACTCTGTTCCTGTGAATAACAGCACAATTGATCCCTTTGCTGCTGTTCCTCTTAATAATTTTGATGGATCTGATATTTTTGGTGATTTTACCTCACAATCTGATTCTGTATCTTCACAGCCCTCCAATAATGTTGTCAGTGATGACAAGCATGATAATATGAATGGTAAATCTTTAGCAGACTCTAATGTTTCAGCTAAAAAGGATGGTTTCCAGGTGAAGTCTGGCATCTGGGCTGATTCACTAAGCCGTGGACTGATTGATCTCAATATAACTGCTCCTAAAAAAGTATCTCTTGTGGAAGTTGGGATCGTGGGTGGATTAAGTGATGGATTCGATGAAAAGGAAAAAGGCCCTCCACCTTCATTTTATATGGGGAGAGCTATGGGTTCAGGATCTGGTCTTGGTAGGTCCGGATTCTCTCCTTCACAGCCAGCAGCGGGAGACGATATATTCTCAAACCTAGGCAGCCAACAATATCAATTTGGTGGGTTCCAAAAGTAA 1683 0.4254 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFTECQMVMNVLWTRLGETGKDWRYVYKALAVIEYLVSHGSERAVDDIIEHTFQISALSSFEYVEPNGKDVGLNVRKKAENIVSLLNDRDKIHDVRNKAAANRDKYVGVSSSGITYKSGSSSFSSGGSYQSSGKYGGFGSRDGDRFSDSYRDKGSYEGEKDYHEKSHHAIDEENSYKKGSARSVSKSQSQENMSSRVSKSSTNAHNYGSVPSQSSSVPANNTEDDMDDFDPRGTSTKASAGNSNQVDLYGQDLIGDLMDAPTSVPVEKPAASNVPEVDLFADATFVSAPSHVDKGASSQPQAEVDLFSSQPAIPSVTPTVDLFSIPEPAVQPDSKTENSVPVNNSTIDPFAAVPLNNFDGSDIFGDFTSQSDSVSSQPSNNVVSDDKHDNMNGKSLADSNVSAKKDGFQVKSGIWADSLSRGLIDLNITAPKKVSLVEVGIVGGLSDGFDEKEKGPPPSFYMGRAMGSGSGLGRSGFSPSQPAAGDDIFSNLGSQQYQFGGFQK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00865 560 Pfam ENTH domain 27 147 IPR013809 -
Cca05g00865 560 MobiDBLite consensus disorder prediction 174 191 - -
Cca05g00865 560 MobiDBLite consensus disorder prediction 200 235 - -
Cca05g00865 560 MobiDBLite consensus disorder prediction 174 302 - -
Cca05g00865 560 SMART enth_2 26 152 IPR013809 -
Cca05g00865 560 PANTHER CLATHRIN INTERACTOR EPSIN 1 1 551 IPR033521 GO:0006623|GO:0030276
Cca05g00865 560 MobiDBLite consensus disorder prediction 236 278 - -
Cca05g00865 560 Gene3D - 19 165 IPR008942 -
Cca05g00865 560 MobiDBLite consensus disorder prediction 425 454 - -
Cca05g00865 560 PANTHER EPSIN/ENT-RELATED 1 551 - -
Cca05g00865 560 SUPERFAMILY ENTH/VHS domain 7 152 IPR008942 -
Cca05g00865 560 CDD ENTH 28 144 - -
Cca05g00865 560 MobiDBLite consensus disorder prediction 425 442 - -
Cca05g00865 560 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Cca05g00865 560 MobiDBLite consensus disorder prediction 505 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00865 Cca-Chr5 23483040 23489175 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00865 K12471 - gmx:100789110 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00865 05 23483040 23489175 Cca05g00865 05 23483040 23489175 ECH