Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00860 ATGCAATCAAGGGGTGTGCCCCTTGAAGAGGGAAAGGAAAGGAGCAACCAGTCCAAGGGTTTGCCTTTGAGACCACTGAAGCTACTTGTGTTGTTTCTAGCTCTATGCGTTGTGTTCTCTGTCATTAGCATATACACTGTTAAGCATTTTGGAATTGAGAGTGTGGTCACCACAGTGAGTTCGAGTTTTCAGCCATGTTATGATGAGGAGCCAGGTGGTTTGGATAAGTGGATTATGCCACCTTTGAAGCTGATCCACAATATGAGTGACAAAGAACTGCTGTGGAGGGCTTCCTTTGTTCCTAGGATCAAGGTTTACCCTTATCCAAGGGTTCCCAAGATTGCATTCATGTTCCTGACCAAGGGACCATTGCCTCTGGCACCCCTTTGGGAGAGGTTTCTCAAGGGACATGAGAAGCTTTTTTCCATATACATTCATTCATTGCCCTCATTTCAACCTCAGTTTCCTCCTTCATCTGTCTTTTACAACAGGCAAATCCCTAGCAAGATTTCTGAGTGGGGAAGGATGAGCATGTGTGATGCTGAAAGAAGACTCCTTGCTAATGCATTGCTTGATATCTCCAACGAGTGGTTCATTCTGCTATCTGAATCATGCATTCCCCTCTACAAGTTCAGTTTTGTCTATCATTACTTAATGAAATCCAAACACAGCTTCGTTGGTGCGTTTGACGATCCGGGTCCATTCGGAAGAGGGCGCTACAACGAGAACATGGCCCCCCTGGTGAACATCACCAAGTGGCGCAAGGGCTCTCAATGGTTCGAAGTAAATCGAAAGCTTGCCATCAACATCGTTGAGGACACTACATTTTATCCTAAGTTCGAACAATATTGTCGGCCGGCTTGTTATGTGGACGAGCACTACTTCCCCACCATGCTCACCATTCAAGCAGGAAATGTGTTGGCAAATAGGAGCATAACTTGGGTGGACTGGTCTAGGGGTGGAGCTCACCCAGCAACGTTTGGAAGAGCAGATATCACAGAAGAGTTTTTCAATAGAGTTCGTGGAGGTCACAAATGCCTATACAACAATAGGAACTCTTCAGTTTGTGTTCTTTTTGCCAGAAAATTTGCTCCCAGTGCTTTGGAACCTTTGTTACATATGGTGGATTCAAAGGTATTGGACTTCTGA 1149 0.4526 MQSRGVPLEEGKERSNQSKGLPLRPLKLLVLFLALCVVFSVISIYTVKHFGIESVVTTVSSSFQPCYDEEPGGLDKWIMPPLKLIHNMSDKELLWRASFVPRIKVYPYPRVPKIAFMFLTKGPLPLAPLWERFLKGHEKLFSIYIHSLPSFQPQFPPSSVFYNRQIPSKISEWGRMSMCDAERRLLANALLDISNEWFILLSESCIPLYKFSFVYHYLMKSKHSFVGAFDDPGPFGRGRYNENMAPLVNITKWRKGSQWFEVNRKLAINIVEDTTFYPKFEQYCRPACYVDEHYFPTMLTIQAGNVLANRSITWVDWSRGGAHPATFGRADITEEFFNRVRGGHKCLYNNRNSSVCVLFARKFAPSALEPLLHMVDSKVLDF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00860 382 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 8 376 IPR044174 GO:0016757
Cca05g00860 382 Pfam Core-2/I-Branching enzyme 114 340 IPR003406 GO:0016020|GO:0016757
Cca05g00860 382 PANTHER - 8 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00860 Cca-Chr5 23409434 23413822 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00860 - - gmx:100819890 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00860 05 23409434 23413822 Cca05g00860 05 23409434 23413822 ECH