Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00132 ATGGCACATCATCACCCAAAACTCCACCTAGAAACCCTCTACTGCTTAGAAGACCACATTCATTGGGAGAAAGAACAAGTAGAAGACCATGATGAGTACAGTACCACAAACAAAAGCTCTTCGCGTGTTGTCTTGTTAGACCACGACCTCTTCTGGGGCAACGAGGAGCTACAAAGTCTTCTCGCCAAAGAACATCACAATGAACTCTCTAACTGTCTCCAAAACAAGCCCACTTTGGCCTTATCTCGCGGAGAAGCAGTGGATTGGGTTCTGAGGGTGAGTGCCCATTACTCCTTCTCTACCCTCACCGCAGTTCTCGCTGTTAACTACCTCGATAGGTTCCTCTTCGGCTTCACGTTTCAGAACGACAAGCCTTGGCTCACGCAACTAGCCGCAGTGGCTTGCCTTTCTCTCGCTGCTAAGGTAGAAGAGACCCACGTGCCCCTTCATCTAGACCTCCAGGTGGACGAGAGTAGGTACTTGTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACGCTTGGATGGAAGATGAATCCAGTAACGCCTCTCTCGTTTCTCGATTATATCACAAGGAAACTTGGGTTAAAGGGTTATCTCTGCCAGGACTTTCTCAGAAGGTGTGAAACCGTTTTTCTCTCTGTCTTCACAGATTCCAGATTCATGAGTTACCTTCCTTCTGTGTTGGCAACCGCTACAGTGATGCGCGTGGTCAATACTGTGGAGCCTCATCTTGGAGTGGAATACCAAGATCAGCTCTTGGGTATTCTTGGAATCGACAAGGAGAAAGTGAAAGAATGTTACAAAGTGATGTTGGAGGTTGTGTGGGGGTACGATGAGGAGGGAAAACGATGGAAGGTGAATAAACGGAAGTTTGAGTCCGTTCCTTGTAGCCCAAACGGCGTAATGGATGAGTCGTTTAGCTGTGATAGTTCGGATGAGTCTTGGGAGTTAGGTGGTTCTGTTCCAATTCCATCCTCCAAGAAGACCAAGACTCAGGATCTGCTTCTATTGAACCATTCAAACGATTTTCTCACCATTCCTCGCTAG 1062 0.4727 MAHHHPKLHLETLYCLEDHIHWEKEQVEDHDEYSTTNKSSSRVVLLDHDLFWGNEELQSLLAKEHHNELSNCLQNKPTLALSRGEAVDWVLRVSAHYSFSTLTAVLAVNYLDRFLFGFTFQNDKPWLTQLAAVACLSLAAKVEETHVPLHLDLQVDESRYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGYLCQDFLRRCETVFLSVFTDSRFMSYLPSVLATATVMRVVNTVEPHLGVEYQDQLLGILGIDKEKVKECYKVMLEVVWGYDEEGKRWKVNKRKFESVPCSPNGVMDESFSCDSSDESWELGGSVPIPSSKKTKTQDLLLLNHSNDFLTIPR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00132 353 Gene3D - 70 183 - -
Cca05g00132 353 Gene3D - 57 273 - -
Cca05g00132 353 PANTHER CYCLINS 32 333 IPR039361 -
Cca05g00132 353 SMART cyclin_7 88 176 IPR013763 -
Cca05g00132 353 SMART cyclin_7 189 277 IPR013763 -
Cca05g00132 353 CDD CYCLIN 82 175 IPR013763 -
Cca05g00132 353 SUPERFAMILY Cyclin-like 186 285 IPR036915 -
Cca05g00132 353 Pfam Cyclin, C-terminal domain 185 297 IPR004367 -
Cca05g00132 353 SUPERFAMILY Cyclin-like 51 183 IPR036915 -
Cca05g00132 353 PANTHER CYCLIN D3.1 PROTEIN 32 333 - -
Cca05g00132 353 Pfam Cyclin, N-terminal domain 59 183 IPR006671 -
Cca05g00132 353 SMART Cyclin_C_2 185 315 IPR004367 -
Cca05g00132 353 ProSitePatterns Cyclins signature. 83 114 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00132 Cca-Chr5 3117825 3119648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00132 10 278 Core Cell Cycle Gene Families AT4G34160 54.275 1.05e-92 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00132 05 3117825 3119648 Cca02g02555 02 46666556 46668742 ECH
Cca05g00132 05 3117825 3119648 Cca05g00132 05 3117825 3119648 ECH
Cca05g00132 05 3117825 3119648 Cca07g00481 07 6503765 6504693 PCT