Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00089 ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCCTGTGACAAAACTGTTTATCTGGTTGATAAGTTGACTGCAGATAACCGAGTGTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACATTTCGACCAACTGTTCAAAAGAACTGGGAGCCTTGACAAAAGCTTTGAAGGGACACCAAAAATTGCCAAGCCAGAAAAAAATATGGATGAGAAACCTGCAGCAGCCAAAGTCTCGAGTATGTTTGGTGGAACAAGGGACAAATGTGCTGGTTGTCAAAAAACGGTGTACCCCACTGAGAAGGTTACTGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAACTCTATTGCAAACACCATCATATCCAATTGATCAAGGAGAAGGGCAATTTAAGCCAACTCGAAGGTGACAATGAGAAGAGTGCAATTAACGGGAAAATCAATGGTGAAGAAGTTGTCGCAGAGACATGA 591 0.4349 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKNMDEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDNEKSAINGKINGEEVVAET 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00089 196 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Cca05g00089 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cca05g00089 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Cca05g00089 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cca05g00089 196 CDD LIM2_SF3 109 169 - -
Cca05g00089 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Cca05g00089 196 Pfam LIM domain 109 163 IPR001781 -
Cca05g00089 196 Pfam LIM domain 10 64 IPR001781 -
Cca05g00089 196 SMART lim_4 9 61 IPR001781 -
Cca05g00089 196 SMART lim_4 108 160 IPR001781 -
Cca05g00089 196 Gene3D Cysteine Rich Protein 4 74 - -
Cca05g00089 196 Gene3D Cysteine Rich Protein 104 173 - -
Cca05g00089 196 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 182 - -
Cca05g00089 196 CDD LIM1_SF3 6 68 - -
Cca05g00089 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cca05g00089 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Cca05g00089 196 PANTHER OS06G0237300 PROTEIN 1 182 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00089 Cca-Chr5 1999777 2001838 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca05g00089 LIM 1.5e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00089 K09377 - gmx:100499947 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00089 05 1999777 2001838 Cca05g00089 05 1999777 2001838 ECH
Cca05g00089 05 1999777 2001838 Cca03g01796 03 37180202 37181802 PCT