Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00082 ATGTATACAGATCCAAGTCCAGACATAAACCTCAGAAAAAACCTATCTAATATTGCCGCCTCGCCCTTATACCCTACTCTTCCGCTAATCAAAATTCAATTGACGCGCACCGTTTCGGAGCGTGGCTCCTCCTCCTCCATGGGCAAGACCAAGACCCTCTCCGTCGATCGAAGACCGTCGGAGTGTGTCTCCTCATATTCCGTCCACAAGATCAGTTCCATAGATTGGATACCTTCTCCGGTGGTGGCTTTGGCCACCAGCTTCGACGGCTTGCGAGTCGCCGCCGCTCGCCACGACGGCTCCCTCGAAATATGGCTCGTCTCGCCCGGCTCCATCGGCTGGCACTGTCAGCTGACTATACACGGAAACCCTAACGGAAGAGTAACGTCGCTTATTTGGTGCCCCGGTGGTCCTCACGGAAGTCGCTTGTTTTCGTCTCACTTAGACGGCTCCGTTACTAAGTGGGATCTTTTCCACTTGAACCAGGAGACGGTGCTTGAGTCGGTTGGTGTCTCAATTTGGAAAATGGCAGTGACTTTTCCCAAGGGTGACAAGATAAATGATGAGAGGAAGGGTGATCAAATGGGGAATGGGTTCCATGATTTTGTTGAACATGAGAGCAGTGAAAGTGATGAAGATTCTGATTCACCTGGTCCTCACGAGGGTTCTGTGGGTGAGAATCCACGTGTGGCAATTGGTCTTGACAATGGACATGTGGGAATTTATGATATCTCTGACACAGATGAATTTATTTACGTAAAATCCTTGCCTCGGGTCAAAGGACGAGTTTTAAGTGTGGCATGGAGTACAGATGCTAACTACATATATTCAGGAAGTAGTGACGGGTTGATAAGATGCTGGAATGCTGCATTGGGCAATGAAATATATAGGATTACAGTTGGACTTGGAGGTTTGGGCAGTGGACATGAACTTTGCATATGGTCATTACTGTCTTTAAGGTCCGGGACACTTGTTAGTGCTGACAGCAGTGGTAGTGTCCAGTTTTGGGACAGCCAACATGGAACTCTCTTGCAAACACATTCACTACACAAGGGACATGTAAATGCTCTGGCAGCAGCCCCTAGTCATGATAGGGTGTTCTCTGCTGGTTCTGATGGCCAGGTTATTCTTTACAAGCTGTGTAGTAGTCAGTCAGCATCATCTGATGATAACAAACCGCTATCAACGATGAAGAGATGGATGTATGTTCACTGTGTAAGGGCTCACACGCATGACATCAGGGCTCTGACTGTTGCTTTACCGATAAGTCATGAAGATATTAAGGCAGAAAGGAGAATTAAAAGAGCTCGACGTGAAGAAAAGCCCATTCATTTTAGTTACCATAAGTGGGCTCATTTGGGGGTTCCCATGCTCATCTCTGCAGGAGATGACACAAAACTTTTTGCATATCCGGTGAAAGAATTCACTAAGTTTTATCCTCATGATATCTGTCCTGCTCCTCAGAGAACACCCATTCAACTAGTGCTCAGTTCTGTCTTTAATCAATCCAAAATGCTTTTAGTTCAATCTTCGCAATGCATAGATATTCATTTGCTACAACTAAAAAATGTACGGACTCCTGGTGATCTTGCAAAAACCAAAATACTTTGTCGAGTCAAGAGTAAGGCATCTCAAAAGATAATTTGCAGTACAATTTCTGATTCAGGGGCGCTATTTGCATACTCTGATCAAGAGAAGCCTAGGCTTTATGAATTGGAAAGTGGTGAGGTTGGTAAAATCACATGTGATGTTCGTAGACGGACACTTCCTCAGAGATTACCATTTGCCCATTCCATGATTTTTACGCACGACTCCTCCTGCTTGATAGTAGCAGGTCACGATAGAATGATATATGTTGTGGATGTTGAGAGATCAGAATTAATGCACACTTTTACTCCCCGCCGCGAATTGAATGAGGAATCAAGTCCAACCGAGCCACCCATCACAAGATTGTTTTCTAGTTCAGATGGGCAGTGGTTGGCAGCTGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAGACACGAAGGAATCAGTGGTTCATTTCTAGATTGGATGGTGCCTCTGTTACAGCTGGTGGATTTTCACCCGAGAACAGCAATGTATTAATAGTTACAACATCATCAAATCAAGTGTATGTTTTTGATGTTGAGGCCAAACAGTTGGGAGAATGGTCAAGGCATACATCTACTCTTCCGAGGAGATATCAGGAATTTCCTGGTGAAGTTATTGGTCTCTCATTCTCTCCTTCGCCAACCTCATCTTCTGTTGTTGTTTACAGCTCCAAGGCAATGTGCTTGATTGACTTTGGGTTGTCTGCGGAGGCAGACGAAAGTCATAATCTAATTAATCAAGATTTGAAGGCAAATATTATACAAAACTTCAATACGAAGAAGAGGACTAAACATAATAGAAAGAACTTTAATGTTGTACCATTAGAGAATCCTGTTTTATTTTTAGCTTATACTTCAAAAAATTCTTTGTTTATGGTAGACAAACCTTGGTTGCAAGTGGTCAAGAGTTTAGAAGCCCCACCAGTCCACAGACATATATTTGGGACATGA 2568 0.4385 MYTDPSPDINLRKNLSNIAASPLYPTLPLIKIQLTRTVSERGSSSSMGKTKTLSVDRRPSECVSSYSVHKISSIDWIPSPVVALATSFDGLRVAAARHDGSLEIWLVSPGSIGWHCQLTIHGNPNGRVTSLIWCPGGPHGSRLFSSHLDGSVTKWDLFHLNQETVLESVGVSIWKMAVTFPKGDKINDERKGDQMGNGFHDFVEHESSESDEDSDSPGPHEGSVGENPRVAIGLDNGHVGIYDISDTDEFIYVKSLPRVKGRVLSVAWSTDANYIYSGSSDGLIRCWNAALGNEIYRITVGLGGLGSGHELCIWSLLSLRSGTLVSADSSGSVQFWDSQHGTLLQTHSLHKGHVNALAAAPSHDRVFSAGSDGQVILYKLCSSQSASSDDNKPLSTMKRWMYVHCVRAHTHDIRALTVALPISHEDIKAERRIKRARREEKPIHFSYHKWAHLGVPMLISAGDDTKLFAYPVKEFTKFYPHDICPAPQRTPIQLVLSSVFNQSKMLLVQSSQCIDIHLLQLKNVRTPGDLAKTKILCRVKSKASQKIICSTISDSGALFAYSDQEKPRLYELESGEVGKITCDVRRRTLPQRLPFAHSMIFTHDSSCLIVAGHDRMIYVVDVERSELMHTFTPRRELNEESSPTEPPITRLFSSSDGQWLAAVNCFGDIYVFNLETRRNQWFISRLDGASVTAGGFSPENSNVLIVTTSSNQVYVFDVEAKQLGEWSRHTSTLPRRYQEFPGEVIGLSFSPSPTSSSVVVYSSKAMCLIDFGLSAEADESHNLINQDLKANIIQNFNTKKRTKHNRKNFNVVPLENPVLFLAYTSKNSLFMVDKPWLQVVKSLEAPPVHRHIFGT 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00082 855 Gene3D - 42 193 IPR015943 GO:0005515
Cca05g00082 855 Gene3D - 216 309 IPR015943 GO:0005515
Cca05g00082 855 SMART WD40_4 299 337 IPR001680 GO:0005515
Cca05g00082 855 SMART WD40_4 630 673 IPR001680 GO:0005515
Cca05g00082 855 SMART WD40_4 249 288 IPR001680 GO:0005515
Cca05g00082 855 SMART WD40_4 113 156 IPR001680 GO:0005515
Cca05g00082 855 SMART WD40_4 679 717 IPR001680 GO:0005515
Cca05g00082 855 SMART WD40_4 340 379 IPR001680 GO:0005515
Cca05g00082 855 SMART WD40_4 59 106 IPR001680 GO:0005515
Cca05g00082 855 SMART WD40_4 586 621 IPR001680 GO:0005515
Cca05g00082 855 Gene3D - 310 426 IPR015943 GO:0005515
Cca05g00082 855 Pfam WD domain, G-beta repeat 263 288 IPR001680 GO:0005515
Cca05g00082 855 Pfam WD domain, G-beta repeat 61 105 IPR001680 GO:0005515
Cca05g00082 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515
Cca05g00082 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 388 IPR001680 GO:0005515
Cca05g00082 855 Gene3D - 458 771 IPR015943 GO:0005515
Cca05g00082 855 SUPERFAMILY WD40 repeat-like 80 717 IPR036322 GO:0005515
Cca05g00082 855 MobiDBLite consensus disorder prediction 185 229 - -
Cca05g00082 855 MobiDBLite consensus disorder prediction 185 219 - -
Cca05g00082 855 SUPERFAMILY Tricorn protease domain 2 540 769 - -
Cca05g00082 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 288 - -
Cca05g00082 855 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 68 855 IPR044622 GO:0010073|GO:0035266
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00082 Cca-Chr5 1841249 1848760 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00082 K14548 - gmx:100797494 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00082 05 1841249 1848760 Cca05g00082 05 1841249 1848760 ECH