Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00080 AACAAGTGATTATTGGTCTAGACCGAGCAGTGGCAACAATGAAGAAGGGTGAGAGGGCCCTAATTAGCATACATCCTGATTATGCGTTTGGAAATGTTGAAGCGAGACGAGATTTGGCTATTGTGCCACCAGGCTTAAATGTAGTCTATGACATTGAGATGATGAATTTTATTGAGAAAGCACCGTGGGAATTGAATAGTAAGGAAAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATGTATTATTTAAAGATGGCAATTATCAGCGAGTAGGGAAGAAGTATGAAAAGGTGCTTGATGTTGAATTTTGCAATGTGAAAGCCTTCTACAGACGAGCACAAGCATATATAGAAACTAGTGACTTCCTTTTAGCAGATGTAGAAATCAAGAAAGCTCTCGAGGTGGACCCACAAAACAGGGAGGTAAAGGTAATTCAGAAGAAGTTGAAGCAACTTCAAGCTGACAGTGACAAAAAGGATGCTAATCTATACGAAAACATGTTTGCCCGTAAAACAAAGGACTCGTCTATGGCTATAAAGAGATTAAAGGTTGAGAAAGATGAGAGGGAAAATGAAGAGGTTGCTAGAATGGGAATGGACGAAGTGGCTGATAGCACAGTGATTTAA 632 0.3987 QVIIGLDRAVATMKKGERALISIHPDYAFGNVEARRDLAIVPPGLNVVYDIEMMNFIEKAPWELNSKEKIEVAGRKKEEGNVLFKDGNYQRVGKKYEKVLDVEFCNVKAFYRRAQAYIETSDFLLADVEIKKALEVDPQNREVKVIQKKLKQLQADSDKKDANLYENMFARKTKDSSMAIKRLKVEKDERENEEVARMGMDEVADSTVI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00080 209 ProSiteProfiles TPR repeat profile. 107 140 IPR019734 GO:0005515
Cca05g00080 209 Gene3D - 1 60 IPR046357 GO:0003755
Cca05g00080 209 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 58 98 - -
Cca05g00080 209 SUPERFAMILY TPR-like 80 169 IPR011990 GO:0005515
Cca05g00080 209 Gene3D Tetratricopeptide repeat domain 102 167 IPR011990 GO:0005515
Cca05g00080 209 Gene3D Tetratricopeptide repeat domain 61 101 IPR011990 GO:0005515
Cca05g00080 209 Coils Coil 143 163 - -
Cca05g00080 209 PANTHER PEPTIDYLPROLYL ISOMERASE 1 57 - -
Cca05g00080 209 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 57 IPR001179 GO:0003755
Cca05g00080 209 PANTHER PEPTIDYLPROLYL ISOMERASE 98 191 - -
Cca05g00080 209 PANTHER PEPTIDYLPROLYL ISOMERASE 58 98 - -
Cca05g00080 209 SUPERFAMILY FKBP-like 1 66 - -
Cca05g00080 209 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 98 191 - -
Cca05g00080 209 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 57 - -
Cca05g00080 209 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1 53 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00080 Cca-Chr5 1814587 1817587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00080 1 56 Calmodulin-binding Proteins AT5G48570 33.929 3.07e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00080 K09571 - gmx:100798382 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00080 05 1814587 1817587 Cca05g00080 05 1814587 1817587 ECH