Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01667 ATGGGAAACTCACATCCTAAAAACCGTGACCCTCCTCAGTTTTCCAGAAACCTTGTTGAAGAGAGGTTTCCCTCTCACAAAAGCAGAACCTTTTCAACGCCGCCACCGCCACCGCGAGAACCACCACCTATGGCTTCTAAGAATCTTCATCATGGTTCTGGCTCAGGGAAACATTCTACAAAAGAGAAATATGCTCTGATTCCTGATAACTTCACTACCCTTGAACAGGTTACAACTGCCTTGAGGAACGAAGGTTTAGAATCATCAAATCTCATCCTTGGAATTGATTTTACCAAAAGCAATGAATGGACTGGAAGAATCTCATTCAATAATAGAAGCCTGCATGCTATTGGAGATACACCTAACCCCTACGAGAAAGCCATCTCCATCATTGGCAAGACTCTGGCTCCTTTTGATGAAGACAACTTGATTCCTTGTTTTGGATTTGGTGATGCCACCACTCATGATCAGGAAGTGTTTAGCTTTCACAGTGATCATTCATCTTGCCATGGTTTTGAGGAAGTCTTGGCTTGCTATCAAAAAGTTGTTCCAAACTTGAGTCTTTCAGGACCAACATCTTACGCTCCAGTGATCGAGGCTGCAATAGACATAGTTGAGAAAAGTCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTCACAACCAATGCCGTCACTGGAGATGGAGAACTCAGTCCACAAGAAGCAAGGACAATCAAAGCAATAGCAGATGCAAGTTCATACCCCCTTTCTATTATTCTGGTTGGAGTTGGTGACGGACCTTGGGATGACATGAAGAAGTTTGATGACAAGATACCGGCTCGTGATTTCGACAATTTTCAGTTTGTTAACTTCACTGAAATAATGTCCAAGAAATCAAGCCCCTCTGAAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCTTTCCAATACAAAGCAGTCATTGAACTTGGACTACTTGGTCGTGCAACAGGAAGGGCAAATAAAATAGTTCCAAGACCTCCTCCAGCTCGTTATGCCAGGCTTGTGCCTCCAGCTCGTGTTCTGAACAATGTGCCATCCTTCATGGATGATGTGAGAAATCAAACGGCATGTGCTATTTGTCTAACAAATGCAAAGGATTTGGCATTTGGATGTGGTCACATGACTTGTAGAGACTGTGGATCCAGGTTAACTAATTGTCCGATATGTCGTCAGAGGATCACCAATCGTCTTAGGGTGTTTTCTGGCTGA 1251 0.4357 MGNSHPKNRDPPQFSRNLVEERFPSHKSRTFSTPPPPPREPPPMASKNLHHGSGSGKHSTKEKYALIPDNFTTLEQVTTALRNEGLESSNLILGIDFTKSNEWTGRISFNNRSLHAIGDTPNPYEKAISIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHSDHSSCHGFEEVLACYQKVVPNLSLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTTNAVTGDGELSPQEARTIKAIADASSYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKKSSPSEKEAAFALAALMEIPFQYKAVIELGLLGRATGRANKIVPRPPPARYARLVPPARVLNNVPSFMDDVRNQTACAICLTNAKDLAFGCGHMTCRDCGSRLTNCPICRQRITNRLRVFSG 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01667 416 SUPERFAMILY RING/U-box 365 410 - -
Cca04g01667 416 ProSiteProfiles Zinc finger RING-type profile. 371 404 IPR001841 -
Cca04g01667 416 CDD RING-HC_RGLG_plant 371 414 IPR045317 GO:0061630|GO:0070534
Cca04g01667 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 415 IPR013083 -
Cca04g01667 416 MobiDBLite consensus disorder prediction 1 60 - -
Cca04g01667 416 Gene3D von Willebrand factor, type A domain 90 300 IPR036465 -
Cca04g01667 416 SUPERFAMILY vWA-like 89 271 IPR036465 -
Cca04g01667 416 Pfam Copine 113 326 IPR010734 -
Cca04g01667 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 50 414 - -
Cca04g01667 416 SMART VWA_4 88 291 IPR002035 -
Cca04g01667 416 Pfam Zinc finger, C3HC4 type (RING finger) 368 408 - -
Cca04g01667 416 PANTHER COPINE FAMILY PROTEIN 1 50 414 - -
Cca04g01667 416 SMART ring_2 371 403 IPR001841 -
Cca04g01667 416 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01667 Cca-Chr4 26560315 26573201 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01494 10 23847204 23858551 Cca04g01667 04 26560315 26573201 PCT