Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01796 ATGTATTTGCAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTATACTGCAAGCCACACTTTGACCAACTTTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCCAAACCAGAAAAAACAGGTGATAATGAGAGACCTGCAGCAACCAAAGTTTTAAGTATGTTTGGTGGAACCAGAGATAAATGTGCCGGTTGTCAGAAAACAGTGTATCCTACTGAAAAGGTTAGTGTGAATGGAACACCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCTTCTAATTACATTGCACACGATGGCAAACTCTACTGCAAACACCACCACATCCAACTGATCAAGGAGAAGGGAAATTTAAGCCAACTTGAAGGTGACCATGAGAAGACTGCAATGCATGAGAAAATCAACGGTGAAGTAGTTGCAGCTGAGACATGA 471 0.4098 MYLQLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGDNERPAATKVLSMFGGTRDKCAGCQKTVYPTEKVSVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDHEKTAMHEKINGEVVAAET 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01796 156 SMART lim_4 68 120 IPR001781 -
Cca03g01796 156 Gene3D Cysteine Rich Protein 64 133 - -
Cca03g01796 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Cca03g01796 156 CDD LIM2_SF3 69 129 - -
Cca03g01796 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 61 94 - -
Cca03g01796 156 ProSiteProfiles LIM domain profile. 67 127 IPR001781 -
Cca03g01796 156 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 3 155 - -
Cca03g01796 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 95 134 - -
Cca03g01796 156 PANTHER OS06G0237300 PROTEIN 3 155 IPR045268 GO:0051015
Cca03g01796 156 Pfam LIM domain 69 123 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01796 Cca-Chr3 37180202 37181802 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g01796 LIM 1.8e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01796 K09377 - gmx:100499957 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01796 03 37180202 37181802 Cca03g01796 03 37180202 37181802 ECH
Cca05g00089 05 1999777 2001838 Cca03g01796 03 37180202 37181802 PCT