Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01771 ATGAAGGGCATGAATGAGAGTAACACCGATGATGGAAACAATCATAACTGGTTGGGCTTCTCTCTCTCACCCCACATGAAAATGGAGGCTACTTCAGCCACTGTTTCCAACGCCGCGGTTCCGACAAGCTTCTACATGTCTTCTCCTCACATGTCCAACTCCGGAATCTGTTACGGTGTTGGGGAAAACGGTAACTTTCATTCTCCTCTTACCGTAATGCCCCTCAAGTCAGATGGCTCACTTTGTATCTTGGAAGCTCTCAGTAGATCACAAACGCAAGTGATGGTGCCAACTTCCTCTCCAAAATTGGAGGACTTCCTAGGTGGTGCAACTATGGGAACTCACGAATATGGTAGCCACGAGAGAGGGGCAAATGCAATGGCTCTGAGCCTAGACAGCATGTATTATAACACTCAAAATGTAGAGGCTCAACCCAACAGAGGCTTTCTTTCAGAACCCTTCAGGCAACAAGGGCATATGAATGTCCAAACACACCCTTATTATTCAGGACTTGCTTATTATCAAGCGCCGTTGGGGGAACAAAGTCAACAAACCAAGGTAACACAAGTTTCGGTTTGCAGCTCCCTAATGCCTCAAATGACAGAAGAAGGTTTAAAAAACTGGGGGGCTCCAAGGGATTATTCAACTACTCATCAACAGGGTCTGGAGCAGCAAATGAACTGTGGTGGCACCACTCTTGGAAGTGTTGGGTGTGGAGAGTTACAGTCTCTAAGCTTATCTATGAGTCCTGGTTCTCAATCTAGTTGTGTCACTGCTCCTTCTGGAACAGATTCTGTGGCTGTGGATGCAAAGAAAAGAGGACATGGTAAGATGGGTCAGAAGCAACCAGTGCATAGGAAATCTATTGACACATTTGGGCAGAGAACTTCGCAGTATAGAGGAGTCACAAGGCATAGATGGACTGGGAGGTATGAAGCGCACTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGTATATTTGGGGGGTTACGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTCAAGTACTGGGGACCTTCAACGCACATTAACTTTGCGATAGAAAATTACCAAGTTGAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAATACGTTGCACACTTGAGAAGAAAAAGCAGCGGATTTTCAAGGGGTGCTTCGATATACAGAGGGGTCACTAGGCACCACCAACATGGAAGATGGCAAGCAAGAATAGGCAGAGTTGCTGGGAACAAGGACCTTTACCTAGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATACGATGTAGCCGCGATCAAATTTCGCGGCGCAAATGCAGTCACAAACTTTGACATTTCAAGATACGATGTTGAGAAAATCATGGCCAGTAGTAATCTTCTTGCTGGGGAGCTCGCAAGGAGAAACAAAGATAACGATCCAAGAAACGAGGCCATTGAGTACAACAAGGGTGTAGCAACAAGCCATAGCAACGTTGAAACGGTTCAAGCAAGAAACAACAACAATGAAAAGAATTCTGAGTGGAAAATGGGTTTGTTTAATCAGACGCCACATGGCTGTGACCAAAAAATAATGCACTGCGGAAATTATAGAAACAGTGCATTCTCTGTGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGAGGAGTCTAGCAAGATTGGGACTCATTTTTCAAACCCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGATAAAACGGGTCCCTCGCTTCTGTTTCCAAAACCACCGATGGAAACAAAGATTGTGAACCCCATTGGTACCACTGTTGCTTCTTGGTTACCCTCACCAACGGTTCAAATGAGGCCACCTCCTGCTATTACTTTGTCTCACTTGCCAGTTTTTGCTGCATGGACTGATACCTGA 1941 0.459 MKGMNESNTDDGNNHNWLGFSLSPHMKMEATSATVSNAAVPTSFYMSSPHMSNSGICYGVGENGNFHSPLTVMPLKSDGSLCILEALSRSQTQVMVPTSSPKLEDFLGGATMGTHEYGSHERGANAMALSLDSMYYNTQNVEAQPNRGFLSEPFRQQGHMNVQTHPYYSGLAYYQAPLGEQSQQTKVTQVSVCSSLMPQMTEEGLKNWGAPRDYSTTHQQGLEQQMNCGGTTLGSVGCGELQSLSLSMSPGSQSSCVTAPSGTDSVAVDAKKRGHGKMGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFAIENYQVELEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVEKIMASSNLLAGELARRNKDNDPRNEAIEYNKGVATSHSNVETVQARNNNNEKNSEWKMGLFNQTPHGCDQKIMHCGNYRNSAFSVALQDLIGIDSVEESSKIGTHFSNPSSLVTSLSSSREASPDKTGPSLLFPKPPMETKIVNPIGTTVASWLPSPTVQMRPPPAITLSHLPVFAAWTDT 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01771 646 PRINTS Ethylene responsive element binding protein signature 299 310 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 PRINTS Ethylene responsive element binding protein signature 440 460 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 MobiDBLite consensus disorder prediction 567 590 - -
Cca03g01771 646 ProSiteProfiles AP2/ERF domain profile. 298 364 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 Gene3D AP2/ERF domain 400 460 IPR036955 GO:0003700|GO:0006355
Cca03g01771 646 Gene3D AP2/ERF domain 297 366 IPR036955 GO:0003700|GO:0006355
Cca03g01771 646 Pfam AP2 domain 298 356 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 Pfam AP2 domain 400 450 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 ProSiteProfiles AP2/ERF domain profile. 400 458 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 SUPERFAMILY DNA-binding domain 399 460 IPR016177 GO:0003677
Cca03g01771 646 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 644 - -
Cca03g01771 646 CDD AP2 399 460 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 644 - -
Cca03g01771 646 CDD AP2 297 365 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 SUPERFAMILY DNA-binding domain 297 365 IPR016177 GO:0003677
Cca03g01771 646 SMART rav1_2 400 464 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 SMART rav1_2 298 370 IPR001471 GO:0003700|GO:0006355
Cca03g01771 646 MobiDBLite consensus disorder prediction 567 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01771 Cca-Chr3 36857318 36861271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01771 381 646 AP2-EREBP Transcription Factor Family AT4G37750 27.609 8.99e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca03g01771 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01771 K09285 - gmx:100787223 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01771 03 36857318 36861271 Cca03g01771 03 36857318 36861271 ECH
Cca05g00886 05 23948645 23953557 Cca03g01771 03 36857318 36861271 PCT