Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01767 ATGATGGACTCCTACGTCCTTGGATCGATCATATGCGCCCTCCTCGGCCTCCTCGCGCTCCTCAATTTTCTTCTCGCACCGAAGAACAACCGTTGCGCGGATAACAACATTACCACCGCCGCCGGACAATGCATTTCCTCCAACCGCCGCGGAGACGGAGACGTCGACGTCATCATTGTCGGAGCCGGTGTCGCTGGCTCCGCTCTCGCTCACACTCTCGGCAAGGATGGACGTCGTGTACTTGTCATAGAAAGAGATTTGAGTGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGAGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGACTGTGTGGAGAAAATTGATGCTCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACACACACGACTCTCATATCCGCTGGATAAGTTTCATTCAAATGTCACAGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTCCCAATGTACGACTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAGAAGGGGATAATTAAAGGTGTGCTCTACAAAACGAAGGATAGTAAGGAATTATCAGCCTGTGCTCCCCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGTTCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTTGTTTCGTTGGCTTAGTTTTGGAGAATTGTGAACTTCCTTGTGcaaatcatggccatgtcatactgggagatccttcgccagttctgttctatcctataagtagtacagaaatccgctgtctggttgaTGTTCCTGGTCAGAAAGTTCCATCTATTTCCAATGGTGAAATGGAAAATTATTTGAAGACGGTGGTAGCTCCACAGGTTCCTTCTGAGCTTCATGATGCTTTCATAGCTgctgtggacaaaggcaacatcaggacaatgccaaacagaagcatgccagcagctccttatcctacacctggagccctcctgatgggagatgcattcaacatgcgccatcctctaactggtggtggaatgactgtggcattatctgatatagtagtgctgcgaaatcttctcaggcctttgcgtgaccTGAATGATGCCTCCAGCCTTTGCAAATACCTTGAATCCTTCTATACCTTACGCAAGCCTGTGGCATCCACTATAAATACGTTGGCAGGAGCCCTTTACAAGGTCTTCTGCGCATCACCTGATCCAGCAAGGAAGGAAATGCGCCAAGCTTGTTTCGATTATCTTAGCCTTGGAGGTCTATTCTCGGAGGGGCCAGTCTCTTTGCTTTCAGGATTAAACCCTCGGCCCTTGAGCCTGGTTCTCCATTTCTTTGCTGTCGCAATATATGGTGTTGGTCGTTTATTGCTACCATTTCCCTCACCTAAACGGATTTGGATTGGAGTCCGATTAATTTCTAGTGCATCTGGAATCATCTTGCCAATAATTAAGGCCGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACTGTTCCAGCTTACTACCGCAATCCCCCCGCTTCATAA 1560 0.3904 MMDSYVLGSIICALLGLLALLNFLLAPKNNRCADNNITTAAGQCISSNRRGDGDVDVIIVGAGVAGSALAHTLGKDGRRVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLDKFHSNVTGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEKGIIKGVLYKTKDSKELSACAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMENYLKTVVAPQVPSELHDAFIAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDASSLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGVRLISSASGIILPIIKAEGVRQMFFPATVPAYYRNPPAS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01767 519 PANTHER SQUALENE MONOOXYGENASE 1 518 IPR040125 GO:0004506|GO:0016126
Cca03g01767 519 Pfam NAD(P)-binding Rossmann-like domain 59 85 - -
Cca03g01767 519 Gene3D - 47 429 IPR036188 -
Cca03g01767 519 SUPERFAMILY FAD/NAD(P)-binding domain 54 430 IPR036188 -
Cca03g01767 519 Pfam Squalene epoxidase 206 478 IPR013698 GO:0004506|GO:0016021|GO:0050660
Cca03g01767 519 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 518 - -
Cca03g01767 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 56 78 - -
Cca03g01767 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 205 220 - -
Cca03g01767 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 333 348 - -
Cca03g01767 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 348 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01767 Cca-Chr3 36812728 36817147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01767 17 518 Miscellaneous Gene Families AT1G58440 77.976 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01767 K00511 - gmx:100820031 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01767 03 36812728 36817147 Cca03g01767 03 36812728 36817147 ECH
Cca05g00881 05 23857999 23862497 Cca03g01767 03 36812728 36817147 PCT