Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01757 ATGCAAGAACACAAATGGAGGAGTAAGAAAGGAGCAATGATGGACCAATGGAGGCGAGGAGCAATGGGGTTGAGAAAGAAGAGTAGAGTTGGGGAGTCTCCAACTTTCACTCCCACTGCAAGCACAGCACCTATTTCTTTCTCCGTCTCCTGGTTGATTGTTGTATTGGATTGGAAGTCTGAAGAATCTATGGAAAACTTGCAGAAGATCAATGCAGGAAACCACTCTGAGAAGGCAACAAACAAGGGATGCGTTTCCACCGAAGATGAGAACATCATAATAAACCCCCAGTTCGATGATGGCCTGAACAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACATGATTCCATGGCAGATGGGAAAATTCTTCCAAAGTCTGGTAAATTCTTTGCATCTACAACAGAACGCACACAAAGTTGGAATGGAATTAAGCAGGAGATCACTGGAAGAGTGCAGCGCAAGCTTGCCTATGAGGTTACTGCTGTAGTTCGGATATTTGGGAACAATGTTACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCAGATCTTCGAGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAGTTCCTTCTAAATGGTTCCCCATCAAAAGTTGTGGTGTATTTAGAAGGTCCCCCTGCAGGCACTGACATTCTTGTCAATACTTTGGTTATAAAGCATGCAGCTAAAACACCACCTTCAACACCCCCGGATTGTGAGGGTGCTGCTTTTGGTGTTAACATAGTTGAAAACAGTAATATGGCCAATGGCACCAATGGATGGTTTCCTCTTGGTAATTGTAATTTGAGCGTTGGAACTGGTTCACCACGTATAATTCCCCCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCCTTAAGTGGGCGCCACATCCTTGTAACCAATCGCACACAAACATGGATGGGACCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTCTAACTTACCAAGTATCTGCTTGGGTTCGAATTGGTTCTGGATCAACTGGGCCTCAGAATGTGAATGTTGCCCTTAGCGTTGACAACCAGTGGGTCAACGGGGGACAAGTTGAGGTTGCTGATGACAGGTGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGACTTGATGATTGCTGGACTCCAAATTTTTGCTGTTGATAGATATGCAAGGTTTAAATATTTAAGGAGACAGACAGACAAGATTCGTAAGCGTGATATTATCCTAAAATTCTCTGGGTTAGACTCAATTGGAAATCTTGGAACCTTGGTGAGAGTTAGACAAATACAAAACGATTTTCCAATTGGATCGTGCATTAGTAGAAGCAACATTGACAATGAAGACTTTGTCGACTTCTTTGTAAAACATTTTAACTGGGCTGTGTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTGAATTACAAGGATGCAGATGAAATGTTAGACTTATGCCAAAAGAACAAGATAGACACCCGAGGTCATTGTATCTTCTGGGATGTGGACGGCACCGTTCAGCAATGGATCAAATCACTAAACAAAACTGATTTGATGAAAGCTGTGCAAAACCGCTTAAATGGCTTATTGACTCGCTACAAGGGCAAGTTCAAGCACTACGATGTTAACAATGAAATGTTGCATGGTTCGTTTTATCAGGATAGGCTAGGAAAGGATATAAGGGCAAACATGTTCAAGACTGCACATCAGCTAGATCCATCTGCTACCCTTTTTGTGAATGACTATCATGTTGAAGATGGATGTGACACGAGATCATCCCCAGAAAAGTACATTCAACATATTCTTGATTTGCAAGGACAAGGTGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATAGTTTGTTCTGCCCTTGATAAATTGGGCACTCTTGGAATACCAATATGGTTTACTGAGCTTGATGTGTCTTCCACAAATGAATATGTGAGAGCTGATGATCTAGAAGTTATGTTGAGGGAAGCTTTGGCACACCCTGCCATAGATGGTGTCATGCTATGGGGATTTTGGGAGTTGTTTATGAGCAGGGAAAATGCACACTTGGTGAATGCAGAAGGGGAACTCAATGAAGCTGGGAAAAGATACCTTGCTCTCAAACAAGAGTGGTTGTCTCATAGCCATGGTTATGTTGACGAGGAAGGGCTATTCAGCTTCAGAGGCTTCAGTGGAACATATAACGTGGAAGTTGTGACCTTAACACAGAAAGTTTCCAAGACATTCGTTGTTGACAAGGGTGACTCGCCACTGGTTCTAACAATCGATTTATAA 2418 0.4289 MQEHKWRSKKGAMMDQWRRGAMGLRKKSRVGESPTFTPTASTAPISFSVSWLIVVLDWKSEESMENLQKINAGNHSEKATNKGCVSTEDENIIINPQFDDGLNNWSGRGCKIALHDSMADGKILPKSGKFFASTTERTQSWNGIKQEITGRVQRKLAYEVTAVVRIFGNNVTTSDVRATLWVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPAGTDILVNTLVIKHAAKTPPSTPPDCEGAAFGVNIVENSNMANGTNGWFPLGNCNLSVGTGSPRIIPPMARDSLGPHESLSGRHILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSGSTGPQNVNVALSVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMIAGLQIFAVDRYARFKYLRRQTDKIRKRDIILKFSGLDSIGNLGTLVRVRQIQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDGTVQQWIKSLNKTDLMKAVQNRLNGLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQLDPSATLFVNDYHVEDGCDTRSSPEKYIQHILDLQGQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGIPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELFMSRENAHLVNAEGELNEAGKRYLALKQEWLSHSHGYVDEEGLFSFRGFSGTYNVEVVTLTQKVSKTFVVDKGDSPLVLTIDL 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01757 805 Gene3D - 257 418 - -
Cca03g01757 805 Gene3D - 84 243 - -
Cca03g01757 805 Gene3D Glycosidases 453 759 - -
Cca03g01757 805 SUPERFAMILY Galactose-binding domain-like 260 421 IPR008979 -
Cca03g01757 805 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 79 805 - -
Cca03g01757 805 Pfam Glycosyl hydrolase family 10 462 719 IPR001000 GO:0004553|GO:0005975
Cca03g01757 805 SUPERFAMILY Galactose-binding domain-like 89 243 IPR008979 -
Cca03g01757 805 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 453 748 IPR001000 GO:0004553|GO:0005975
Cca03g01757 805 Coils Coil 731 751 - -
Cca03g01757 805 SUPERFAMILY (Trans)glycosidases 456 756 IPR017853 -
Cca03g01757 805 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 676 686 IPR031158 -
Cca03g01757 805 SMART glyco_10 499 749 IPR001000 GO:0004553|GO:0005975
Cca03g01757 805 MobiDBLite consensus disorder prediction 17 38 - -
Cca03g01757 805 Pfam Carbohydrate binding domain 262 405 IPR003305 GO:0016798
Cca03g01757 805 Pfam Carbohydrate binding domain 91 228 IPR003305 GO:0016798
Cca03g01757 805 PANTHER GLYCOSYL HYDROLASE 79 805 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01757 Cca-Chr3 36663540 36668601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01757 75 805 Glycoside Hydrolase AT1G58370 73.943 0.0 1166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01757 - - gmx:100784250 1447.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01757 03 36663540 36668601 Cca03g01757 03 36663540 36668601 ECH
Cca05g00871 05 23554856 23560628 Cca03g01757 03 36663540 36668601 PCT