Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02555 ATGGCAATCCAGCATCATCACAATGACCAACTACAACACAATGAAAATGTCTCATCTGTCCTTGATGCCCTTTACTGTGATGAAGTGAAGTGGgaagaagaagaagaagaagaacaggaagaaAGTGATGTCACAACTCACAATGATGACACTGCCACTTCCCTTCTCCCTCTTCTCTTGTTGGAGCAAGACTTGTTCTGGGAGGATGAAGAACTTAACTCTCTTTTTTCCAAAGAGAAGGTTCAACTAGAAGAAGTAGCCTATGCCTataacaacgtgaacaacaacaataataataacactaataatGTGCATTTGGACTCTTGTCTCTCTCAGCCTCGTGGTGAGGCAGTGGAATGGATGCTTAAAGTCAATGCTCACCATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTATCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAACTGCAAGACACAAAGTGCGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCCACACTCAAATGGAAGATGCACCCTGTCACCCCTCTCTCATTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACTCATCTCCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGGCTGTGCTTTTAGATTCAAGATTTGTTGGGTGTCTCCCTTCTGTTTTGGCCACTGCCACAATGCTGCATGTTATAGACCAAATTGAGCACGGTGGTGGGATGGAATACAAAAATCAACTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGCTATAATACGATTCTACAAGTCTCAAACGCCAATAATTATGGTGATAACAACACTAGTAAGCGCAAGTATGAGGAATTCCCAGGCAGCCCAAGTGGCGTAATTGATGCTGCATTTAGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCACCACCAGAGCCTCTGTTCAAGAAGACCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTTATTGTCGGAATTGTTGGCACCTCTCCTTAA 1173 0.4203 MAIQHHHNDQLQHNENVSSVLDALYCDEVKWEEEEEEEQEESDVTTHNDDTATSLLPLLLLEQDLFWEDEELNSLFSKEKVQLEEVAYAYNNVNNNNNNNTNNVHLDSCLSQPRGEAVEWMLKVNAHHGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQLQDTKCVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLAVLLDSRFVGCLPSVLATATMLHVIDQIEHGGGMEYKNQLLSVLKISKEKVDECYNTILQVSNANNYGDNNTSKRKYEEFPGSPSGVIDAAFSSDGSNDSWAVGSSLYSPPEPLFKKTRTQGQQMKLSPLNRVIVGIVGTSP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02555 390 CDD CYCLIN 114 206 IPR013763 -
Cca02g02555 390 Pfam Cyclin, N-terminal domain 111 213 IPR006671 -
Cca02g02555 390 PANTHER CYCLINS 39 365 IPR039361 -
Cca02g02555 390 SUPERFAMILY Cyclin-like 217 326 IPR036915 -
Cca02g02555 390 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Cca02g02555 390 SUPERFAMILY Cyclin-like 68 214 IPR036915 -
Cca02g02555 390 Pfam Cyclin, C-terminal domain 216 326 IPR004367 -
Cca02g02555 390 Gene3D - 108 214 - -
Cca02g02555 390 PANTHER CYCLIN D3.1 PROTEIN 39 365 - -
Cca02g02555 390 SMART cyclin_7 119 207 IPR013763 -
Cca02g02555 390 Gene3D - 215 306 - -
Cca02g02555 390 SMART Cyclin_C_2 216 344 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02555 Cca-Chr2 46666556 46668742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02555 1 309 Core Cell Cycle Gene Families AT4G34160 53.722 6.68e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02555 K14505 - gmx:547740 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02555 02 46666556 46668742 Cca02g02555 02 46666556 46668742 ECH
Cca05g00132 05 3117825 3119648 Cca02g02555 02 46666556 46668742 ECH
Cca07g00481 07 6503765 6504693 Cca02g02555 02 46666556 46668742 ECH
Cca06g01495 06 29890539 29892247 Cca02g02555 02 46666556 46668742 PCT