LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02820	ATGGAAAACTCAGAGAAGGTCGATGTTGGAAAACTCTCAGAGAACACAACAAACACAGGACGTGTTTCCACCGATGATGAAAACATCATAAGGAACCCTCAGTTTGAGGATGGCCTGAATAATTGGACTGGAAGAGGCTGCAAGATTGTGTTACATGATTCCATGGGAGATGGGAAAATCCTTCCGAAATCCGGGAAATTATTTGCATCTGCAACTGAACGCACTCAAAGCTGGAACGGAATTCAGCAAGAGATCACTGGACGAGTGCAGCGCAAGATTGCGTATGAAGTCACTGCTTTAGTTCGGATATTTGGGAATAATGTCACTACATCTGATGTACGTGCTACGTTATGGGTTCAAAAACCAGATCTCCGAGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGCTCAAATGCAGGGAAAGTTCCTTCTAAATGATTCCCCCTCAAAAGTAGTTGTTTATTTGGAAGGCCCTCCTGCAGGCACTGACATTCTTGTAAACACTTTGGTTATAAAGCATGCAGCAAAAACACCGCCTTCAACACCCCCTGATTTTGAGAATGTCTCTTTTGGGGTTAATATAATTGACAACAGCAGTCTGGATAATGGCACCAACGGGTGGTTTCCTCTTGGTAATTGTACTTTGAACGTTGGAACTGGTTCACCACGTATAATTCCACCGATGGCAAGAGACTCTCTTGGTCCTCATGAATCCCTGAGTGGGCGCTACATTCTTGTAACCAACCGTACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTATTTAACTTATCAAGTATCTGCTTGGGTCCGGATTGGTTCCGGATCAACTGGGCCTCAGAATGTGGGTATTTCCCTTAGTGTTGATGGCCAGTGGGTCAATGGAGGACAAACTGAAGTCGCCGATAGCAGATGGCATGAAATTGGTGGTTCATTTAGAATTGAAAAACAGCCATCTAATGTTATGGTTTATATTCAAGGTCCTGCTTCTGGCGTCGACTTAATGGTTGCTGGAGTTCAAATTTTTCCTGTCAATAGGCAGGCAAGGTTTAGATATTTAAAGAAACAAACAGACAAGATCCGTAAGCGTGATGTTACGTTGAAATTTTCCGGGTTGGACTCATGCGAGTATACATTTGTGAAAGTTAGACAAATATTGAACGATTTTCCAATTGGATCATGCATCAATAGAACAAATATTGACAATGAAGATTTTGTTGACTTCTTTGTTCAACATTTTAACTGGGCTGTATTTGGTAATGAGTTGAAGTGGTATTGGACAGAGCCACAAAAAGGGAATTTTAACTACAACGATGCCGATGAGATGTTAGACTTGTGTCAGAAGTACAAGATAGACATTCGTGGTCATTGTATCTTCTGGGAAGTAGACAGCAACGTTCAGCAATGGATCAAATCACTGAATAAAAACGATTTAATGACAGCTGTCCAAAATCGCTTAACCGGCTTATTGACTCGCTACAAAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATAAGGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCACACCAACTAGATCCATCAGCTACCCTATTTGTGAATGATTATCATGTTGAAGATGGATGTGACACCAATTCATCTCCAGAAAAATACATTCAACAGATTATTGATTTGCAAGACCAAGGTGCACCAGTTGGAGGAATTGGAATTCAGGGTCATATTGATAGTCCTGTGGGGCCTATTGTTTGTTCCGCGCTCGATAAATTGGGCTCTCTTGGTCTACCAATCTGGTTCACCGAGCTTGACGTGTCTTCCACTAATGAATATGTCAGAGGCGATGATTTGGAAGTTATGCTGCGCGAAGCGATGGCACACCCTGCGGTAGACGGTGTAATGCTGTGGGGATTTTGGGAATTGTTTATGAGCCGAGACAACTCGCACTTGGTGAATGCAGAAGGTGATGTTAATGAAGCTGGGAAAAGATTCATTGCTCTTAAACAAGAGTGGTTATCTCATAGTCATGGTCATGCTGATGAGAAAGGGGAATTCAACTTCAGGGGATTTAGTGGTACGTACAATGTGGAAGTTGTTAGCTCAGAAAAGATAACTTCCAAGACATTCGTTGTTGACAAGGGTGACTCTTCATTGGTTATATCAATAGACTTGTAA	2223	0.4184	MENSEKVDVGKLSENTTNTGRVSTDDENIIRNPQFEDGLNNWTGRGCKIVLHDSMGDGKILPKSGKLFASATERTQSWNGIQQEITGRVQRKIAYEVTALVRIFGNNVTTSDVRATLWVQKPDLREQYIGIANVQATDKDWAQMQGKFLLNDSPSKVVVYLEGPPAGTDILVNTLVIKHAAKTPPSTPPDFENVSFGVNIIDNSSLDNGTNGWFPLGNCTLNVGTGSPRIIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLYLTYQVSAWVRIGSGSTGPQNVGISLSVDGQWVNGGQTEVADSRWHEIGGSFRIEKQPSNVMVYIQGPASGVDLMVAGVQIFPVNRQARFRYLKKQTDKIRKRDVTLKFSGLDSCEYTFVKVRQILNDFPIGSCINRTNIDNEDFVDFFVQHFNWAVFGNELKWYWTEPQKGNFNYNDADEMLDLCQKYKIDIRGHCIFWEVDSNVQQWIKSLNKNDLMTAVQNRLTGLLTRYKGKFKHYDVNNEMLHGSFYKDRLGKDIRANMFKTAHQLDPSATLFVNDYHVEDGCDTNSSPEKYIQQIIDLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLGSLGLPIWFTELDVSSTNEYVRGDDLEVMLREAMAHPAVDGVMLWGFWELFMSRDNSHLVNAEGDVNEAGKRFIALKQEWLSHSHGHADEKGEFNFRGFSGTYNVEVVSSEKITSKTFVVDKGDSSLVISIDL	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02820	740	MobiDBLite	consensus disorder prediction	10	25	-	-
	Car05g02820	740	Gene3D	Glycosidases	389	696	-	-
	Car05g02820	740	MobiDBLite	consensus disorder prediction	1	25	-	-
	Car05g02820	740	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	388	683	IPR001000	GO:0004553\|GO:0005975
	Car05g02820	740	Pfam	Carbohydrate binding domain	199	342	IPR003305	GO:0016798
	Car05g02820	740	Pfam	Carbohydrate binding domain	28	165	IPR003305	GO:0016798
	Car05g02820	740	PANTHER	ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN	16	740	-	-
	Car05g02820	740	Gene3D	-	22	180	-	-
	Car05g02820	740	Gene3D	-	197	354	-	-
	Car05g02820	740	Pfam	Glycosyl hydrolase family 10	398	654	IPR001000	GO:0004553\|GO:0005975
	Car05g02820	740	PANTHER	GLYCOSYL HYDROLASE	16	740	IPR044846	GO:0004553\|GO:0005975
	Car05g02820	740	PRINTS	Glycosyl hydrolase family 10 signature	465	477	IPR001000	GO:0004553\|GO:0005975
	Car05g02820	740	PRINTS	Glycosyl hydrolase family 10 signature	547	558	IPR001000	GO:0004553\|GO:0005975
	Car05g02820	740	PRINTS	Glycosyl hydrolase family 10 signature	579	591	IPR001000	GO:0004553\|GO:0005975
	Car05g02820	740	SUPERFAMILY	Galactose-binding domain-like	26	180	IPR008979	-
	Car05g02820	740	SUPERFAMILY	(Trans)glycosidases	394	691	IPR017853	-
	Car05g02820	740	SMART	glyco_10	434	684	IPR001000	GO:0004553\|GO:0005975
	Car05g02820	740	ProSitePatterns	Glycosyl hydrolases family 10 (GH10) active site.	611	621	IPR031158	-
	Car05g02820	740	SUPERFAMILY	Galactose-binding domain-like	197	357	IPR008979	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02820	Car-Chr5	73276914	73280802	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g02820	21	740	Glycoside Hydrolase	AT1G58370	73.379	0.0	1139

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02820	-		-	gmx:100784250	1316.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g02820	05	73276914	73280802	Car05g02820	05	73276914	73280802	ECH
	Car04g03343	04	61869896	61874100	Car05g02820	05	73276914	73280802	PCT