Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03373 ATGGACAAGATCAAAGCTAAATACCAACTTCAAAATGAAGATTATAAACCTTCACCTGTAACCGCTTTAGCCACCAGCGTCGATGGTTCACGCGTCGCTGCATCGCGTGAAGACGGTTCTTTAGAGCTTTGGCTTGTTTCTCCTAATACAGTTAATTGGCACTGTCAATTGGTTATCCATGGAGACCCTAATAGGATTGTTTCGTCGCTAATTTGGTGTCCTGGTGGTTTAAAAGGATTTCCTTATGGTCGTTTATTTTCGTCCAATATTGATGGTTCTGTTTCGTTCTGGGATTTCTTTCAATTGAAACAAACGATGGTGCTTGAATCTAGTGGTGCCTCAATCTGGCAAATGGCTGTGGTGCTGCCTAAAAGTGACCATGGCGAAACCAATGGTTATAGAATGGGAAATGGTTATTTGAAGAGATTTCATGGTTCAGATGAACATGAGAACAGTGATAGTGAGGAAGATTCCGATTCACCTGACGTTATAAAGCAATCCAGTTTAGAGGATCCAAGAGTGGCAGTTGGTTTTGACGATGGATGTGTTAGAGTTTATACTATTTCTGATGAAAATGAGTTTATATATAAAAAATCCTTAACCCGGGTTGAAGGACGAGTTTTAAGTGTGACTTGGAGCACGGATGCTAAATTCATATTTTCAGGAAGTAGTGATGGGATAATACGAATCTGGGATGCTAAATCAGGTCTTGAAGTCCATAGGATTACAGCTAATTATGGAGGTGTGGGAAATGGACATAAACTTTGTATATGGTCATTACTGTATTTAAGGTCTGGGACACTGGTTAGTGGAGACAGCAGTGGTAGCGTCCAGTTTTGGGATGTCGAAAATGGAACTTCCCTAGCAATTATTACTGGACACAAGGGAGATGTACATGCTCTGGCAGCAGCCCCTAATCACAATATGCTGTTCTCTGCCGGTTCTGATGGAAAGGTTCTTCTTTATAAGGAGTCTACGTCAACAATCGAGAAATGGATCTATGTTGATTATAAGAAAGCTCATACACATGATGTCCGAGCCTTGACCGTTGCTGTGCCGATAAGTCAAGAAGATACTTTGCCAGATGAAAGGATAAAAAGAGCACGACATGCAGCAAAGCCAAATGATTTTAGTTATCATAAATGGGCTCATGTGGGGGTTCCCATGCTTATCTCAGCAGGAGATGACACAAAACTCGTTGCATACCCCGCACAACAATTCACCGAGTATGATCCTCATCATATGTGTCCTATTCCTCAGAGAACACCCATTCAAGTAGCACTTAATACTTCCTTCAATCAATTACCAATGCTTTTACTCCAGTCTTCGCATTGGGTAGAAGTCCGTTTGCTACATCTAAAAAATGTTCGCACAACTGGAGGCTATGCAAAGGCTGAAGGTGTTGGCCGAGTCAAGAGTAAGGCATCTCGTAAGATAATTTGTAGCACCCTTGCAAATTCAGGGGCTTTTTTGGCATATTCTGATAATGCAAAGCCTTGTCTTTTTAAATTGGAGAGATCCAAAGCTGGAAAAATGACATTGGGTTTCGAAAAGAGGAAGCTTCCTGAGAGATTACCTTTTGCCCATTCAATGGTTTTTACTTGTGACTCCTCTTGGTTGGTAGTAGCTGGGCATGATAGAAGGATATATGTTTTGGATGCCAATAGCTCAGAAATAATACACACTTTTACACCCTTTCGTGAACCTCAAGATGATGGATTACCACCAGCCGAACCACCCATCACAAGATTGTTTACAAGTTCTGATAGGCAGTGGTTGGCCGCCGTGAATTGCTTTGGGGATATATATGTATTTAACTTGGAGACACTAAGGCAGCACTGGTTCATTTCAAGATTAGACGGTGCCTCTGTTACAGCTGGGGGATTTCCGCCCCAGAACAACAATGTACTGATAGTTACAACTTCCTCGAATCAAGTGTATGCTTTTGACGTAGAGGCCAGGCAACTGGGGGAATGGTCAGTGCGGAACACATTTGTTCTTCCCAGGAGATTTCAGGAGTTTCCTGGTGAAGTCATCGGGCTTTCATTCCCTCCCTCGTCAACTTCATCTTCTGTGATGGTTTATAGCTCCAGGGCAATGTGCTTGATTGACTTTGGCTTGCCCGTGGAGCAAGATGATGAAATCATACATACTCAAGATTCAATAGTCAAGAATTCACAAAATTTTAACCTTAAGAAAAGGACTAAATTTAGGAAAAATTTTGACGTTTTGCCGTTAGGAAACGATCCTGTGTTATTTTTATCCCACATTTCAAATAATCACTTCTTAATGATAGACAAACCCTGGACGGAAGTGGTCCAAAGCTTAGATGTTGAACCAGTCCACAGACACATATATGGGACATAG 2367 0.4166 MDKIKAKYQLQNEDYKPSPVTALATSVDGSRVAASREDGSLELWLVSPNTVNWHCQLVIHGDPNRIVSSLIWCPGGLKGFPYGRLFSSNIDGSVSFWDFFQLKQTMVLESSGASIWQMAVVLPKSDHGETNGYRMGNGYLKRFHGSDEHENSDSEEDSDSPDVIKQSSLEDPRVAVGFDDGCVRVYTISDENEFIYKKSLTRVEGRVLSVTWSTDAKFIFSGSSDGIIRIWDAKSGLEVHRITANYGGVGNGHKLCIWSLLYLRSGTLVSGDSSGSVQFWDVENGTSLAIITGHKGDVHALAAAPNHNMLFSAGSDGKVLLYKESTSTIEKWIYVDYKKAHTHDVRALTVAVPISQEDTLPDERIKRARHAAKPNDFSYHKWAHVGVPMLISAGDDTKLVAYPAQQFTEYDPHHMCPIPQRTPIQVALNTSFNQLPMLLLQSSHWVEVRLLHLKNVRTTGGYAKAEGVGRVKSKASRKIICSTLANSGAFLAYSDNAKPCLFKLERSKAGKMTLGFEKRKLPERLPFAHSMVFTCDSSWLVVAGHDRRIYVLDANSSEIIHTFTPFREPQDDGLPPAEPPITRLFTSSDRQWLAAVNCFGDIYVFNLETLRQHWFISRLDGASVTAGGFPPQNNNVLIVTTSSNQVYAFDVEARQLGEWSVRNTFVLPRRFQEFPGEVIGLSFPPSSTSSSVMVYSSRAMCLIDFGLPVEQDDEIIHTQDSIVKNSQNFNLKKRTKFRKNFDVLPLGNDPVLFLSHISNNHFLMIDKPWTEVVQSLDVEPVHRHIYGT 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03373 788 Pfam WD domain, G-beta repeat 18 44 IPR001680 GO:0005515
Car04g03373 788 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Car04g03373 788 MobiDBLite consensus disorder prediction 145 164 - -
Car04g03373 788 Gene3D - 11 140 IPR015943 GO:0005515
Car04g03373 788 SUPERFAMILY Tricorn protease N-terminal domain 18 240 - -
Car04g03373 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 236 - -
Car04g03373 788 Pfam Anaphase-promoting complex subunit 4 WD40 domain 175 246 IPR024977 -
Car04g03373 788 ProSitePatterns Trp-Asp (WD) repeats signature. 219 233 IPR019775 -
Car04g03373 788 Gene3D - 141 409 IPR015943 GO:0005515
Car04g03373 788 Gene3D - 467 719 IPR015943 GO:0005515
Car04g03373 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 323 - -
Car04g03373 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Car04g03373 788 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 8 788 IPR044622 GO:0010073|GO:0035266
Car04g03373 788 SUPERFAMILY WD40 repeat-like 170 651 IPR036322 GO:0005515
Car04g03373 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 323 IPR001680 GO:0005515
Car04g03373 788 SMART WD40_4 3 45 IPR001680 GO:0005515
Car04g03373 788 SMART WD40_4 518 553 IPR001680 GO:0005515
Car04g03373 788 SMART WD40_4 284 323 IPR001680 GO:0005515
Car04g03373 788 SMART WD40_4 243 281 IPR001680 GO:0005515
Car04g03373 788 SMART WD40_4 101 187 IPR001680 GO:0005515
Car04g03373 788 SMART WD40_4 193 232 IPR001680 GO:0005515
Car04g03373 788 SMART WD40_4 52 98 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03373 Car-Chr4 62275772 62282710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03373 174 349 Miscellaneous Gene Families AT5G08390 25.989 2.19e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03373 K14548 - gmx:100797494 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03373 04 62275772 62282710 Car04g03373 04 62275772 62282710 ECH