Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03344 ATGGAGGCATACACTAATAATCACCTAAGTGAAAACTcaagtccaaatccaaatcaaagttcaaggccaaATTTCTTGTACTCTTCTTCAAGTGGAAACAACCAAcatcatcatcatcataatcataatcatcatcatcatgatgatcataatcaAATTCCAATTAACACCTTTCATCTTCAATCTAGTGGATCAAGTCAATGTTTTCAAGTACAACCACAACAACACTCTATTGTGAAAACAGAAGCCAATAATAGTTCACAACTTCACACTCCAATTTTTCCCTACCCTTTGATGAGAACAAATATTATTAATCCTCACACAAATGTTATGCATAATCATCATCAAGGAGGAGGGAGTCCAAGTTCAAGTGAAGCTGAAGCTATCAAAGCCAAAATCATTGCTCATCCTCAATACTCTACTCTTTTGGAAGCTTATATGGATTGTCAAAAGATTGGAGCTCCACCGGAAGTGGTGGCGCGTCTGGTTTCGGCTAGGCAAGAGTTTGAAGCAAAACAAAGATCTTCAATTAACTCGAGGGAATCTTCCAAAGACCCAGAACTAGACCAATTCATGGAAGCTTATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCAATACAAGAGGCTATGGATTTCATGAAGAGAATTGAAAATCAGCTAAATATGCTTTGCAATGGACCCGTTCGGATCTTCCCCGATGATAAATGTGAAGGAGTTGGTTCATCAGAAGAAGATCAAGAGAATAGTGGTGGAGAAACAGAATTGCCAGAGATTGATCCTCGAGCAGAAGACCGTGAACTAAAAAATCATTTGTTGAAGAAATATAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAAGCTAGGCAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACAGGATTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGACTTCATCCTCAAAATGCAACTCTTTATATGGATGCTCACTACATGCCTGATGGTCCCTACCGTCTTGGTCcatga 1167 0.3582 MEAYTNNHLSENSSPNPNQSSRPNFLYSSSSGNNQHHHHHNHNHHHHDDHNQIPINTFHLQSSGSSQCFQVQPQQHSIVKTEANNSSQLHTPIFPYPLMRTNIINPHTNVMHNHHQGGGSPSSSEAEAIKAKIIAHPQYSTLLEAYMDCQKIGAPPEVVARLVSARQEFEAKQRSSINSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMKRIENQLNMLCNGPVRIFPDDKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDAHYMPDGPYRLGP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03344 388 SMART KNOX2_2 178 229 IPR005541 GO:0003677|GO:0005634
Car04g03344 388 MobiDBLite consensus disorder prediction 1 52 - -
Car04g03344 388 Pfam ELK domain 270 291 IPR005539 GO:0003677
Car04g03344 388 MobiDBLite consensus disorder prediction 239 266 - -
Car04g03344 388 Pfam Homeobox KN domain 310 349 IPR008422 GO:0003677|GO:0006355
Car04g03344 388 SUPERFAMILY Homeodomain-like 291 365 IPR009057 -
Car04g03344 388 ProSiteProfiles ELK domain profile. 270 290 IPR005539 GO:0003677
Car04g03344 388 ProSiteProfiles 'Homeobox' domain profile. 290 353 IPR001356 GO:0003677
Car04g03344 388 ProSitePatterns 'Homeobox' domain signature. 328 351 IPR017970 GO:0000981|GO:0006355
Car04g03344 388 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 380 - -
Car04g03344 388 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 11 380 - -
Car04g03344 388 SMART ELK_2 270 291 IPR005539 GO:0003677
Car04g03344 388 Pfam KNOX1 domain 128 170 IPR005540 GO:0003677|GO:0005634
Car04g03344 388 SMART KNOX1_2 127 171 IPR005540 GO:0003677|GO:0005634
Car04g03344 388 Gene3D - 287 360 - -
Car04g03344 388 SMART HOX_1 292 357 IPR001356 GO:0003677
Car04g03344 388 Pfam KNOX2 domain 183 228 IPR005541 GO:0003677|GO:0005634
Car04g03344 388 CDD homeodomain 302 354 IPR001356 GO:0003677
Car04g03344 388 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03344 Car-Chr4 61911738 61917647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03344 124 388 Homeobox Transcription Factor Family AT4G08150 81.852 2.02e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car04g03344 KNOX2 8.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03344 - - gmx:100807602 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03344 04 61911738 61917647 Car04g03344 04 61911738 61917647 ECH
Car05g03118 05 75980059 75980784 Car04g03344 04 61911738 61917647 ECH