Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03343 ATGGCTGATGTTCGGATATACGGCAACAATGTCACTAATGCCGATGTACGGTCTACTGTGTGGGTTCAAACACCAGATCTCCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATACAGATTGGGTGACAATGCAGGGAAAGTTCCTTCTAAATGGTTCGCCGTCAAAAGTGGTTCTTTACTTAGAGGGCCCTCCTCCTGGCACTGACATTCTTGTCAATACTTTGGTTGTAAAACATGCTGCTAAAACACCTCCTTCAATACCACCAAATGTACAGAATGTTGCTTTTGGGGTAAATGTAATTGAAAACAGCAATCTATCTGATGACACAAAAGGATGGTTTCCTCTTGGTAATTGCACTTTAAGCGTTAAAACAGGTTCTCCACATATAATTCCCCCAATGGCAAGAGATTCTCTTGGACCTCATGAGCTCCTAAGTGGCCGCTACATACTTGTAACTAACAGATCACAAACTTGGAATGGTCCTGCTCAGGTGATCACTGATAAATTGAAGCTCTTTTTGACTTATCAAGTATCGGCTTGGGTCCGAATTGGTTCTGGTTCAAACGGGCCACAAAATGTGAATGTTGCACTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACCGAGGTTTCGGATGACAGATGGCATGAAATTGGTGGATCGTTTAGAATTGAAAAACAACCATCAAAAGTTATGGTTTATATCCAAGGTCCTGCTTCTGGTGTGGATTTTATGGTTGCTGGACTTCAAATTTTCCCTGCTGATAGACATGCAAGGTTTAGATATTTAAAGATGCAGACAGACAAGATCCGGAAGCGTGATGTTGTCTTGAAATTCCCTGGGCTAGACTCTAGCAGCTACCCTAACACCACAGTGCAAGTTAGACAAACGCAGAACGATTTCCCGATCGGAACATGCATCAGCAGATCAAACATTGACAATGAAGATTTCGTCAACTTCCTTGTGAAGCACTTCAACTGGGCTGTGTTTGGAAATGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGGAATTTGAATTACAAAGACGCCGATGATCTTTTAAGCCTGTGCCAAAAGTACAAGATAGAAACTCGTGGACACTGCATCTTCTGGGAAGTGGACGGAACCGTTCAACAATGGATTAAATCGCTGAATAAAAACGATTTGATGACAGCCGTTCAAAACCGTTTAACAAGTCTTCTGACTCGATACAAGGGTAAATTCAGTCACTATGATGTTAACAATGAAATGCTGCATGATATAAGAGCAAACATGTTCAAGATTGCAAACCAATTAGATCCATCTGCTACATTATTTGTGAATGATTATCATATTGAAGATGGATGCGACACGAGATCATGTCCTGATAAGTACATTCAACACATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTCAGTGGAATTGGAATTCAAGGACACATAGATAGTCCAATCGGGCCTATCGTTTGTTCTTCGCTTGATAAATTAGGTATTCTTGGTCTACCTATATGGTTTACTGAGCTTGATGTGTCTTCTTTGAATGAATATGTGAGAGGTGATGATCTTGAAGTTATGCTTAGAGAAGCTTTTGCTCACCCTGCTGTAGAAGGCATAATGTTGTGGGGATTTTGGGAGTTGTTTATGAGTAGGGACAATGCACATTTGGTGAATGCTGAAGGTGATATTAATGAAGCTGGGAAAAGGTTTCTAGCTTTGAAACAAGAGTGGCTATCTCACAGTCATGGTCATGTTGATGAGCAAGGTCAATATAATTTTAGAGGGTTTTATGGAACATATAATGTTGATGTTGTGACACCATCAAAGAAAATTTCTAAGACATTTGTGCTTGACAAAGGTGATTCTCCATTGGTGGTGTCCTTTGATTTATAA 1908 0.4088 MADVRIYGNNVTNADVRSTVWVQTPDLREQYIGIANVQATDTDWVTMQGKFLLNGSPSKVVLYLEGPPPGTDILVNTLVVKHAAKTPPSIPPNVQNVAFGVNVIENSNLSDDTKGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRSQTWNGPAQVITDKLKLFLTYQVSAWVRIGSGSNGPQNVNVALGVDNQWVNGGQTEVSDDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDFMVAGLQIFPADRHARFRYLKMQTDKIRKRDVVLKFPGLDSSSYPNTTVQVRQTQNDFPIGTCISRSNIDNEDFVNFLVKHFNWAVFGNELKWYWTEPQQGNLNYKDADDLLSLCQKYKIETRGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLTSLLTRYKGKFSHYDVNNEMLHDIRANMFKIANQLDPSATLFVNDYHIEDGCDTRSCPDKYIQHILDLQEQGAPVSGIGIQGHIDSPIGPIVCSSLDKLGILGLPIWFTELDVSSLNEYVRGDDLEVMLREAFAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDEQGQYNFRGFYGTYNVDVVTPSKKISKTFVLDKGDSPLVVSFDL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03343 635 Gene3D Glycosidases 292 591 - -
Car04g03343 635 Gene3D - 98 257 - -
Car04g03343 635 Gene3D - 1 83 - -
Car04g03343 635 Pfam Carbohydrate binding domain 102 245 IPR003305 GO:0016798
Car04g03343 635 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 2 635 - -
Car04g03343 635 Pfam Glycosyl hydrolase family 10 302 549 IPR001000 GO:0004553|GO:0005975
Car04g03343 635 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 293 578 IPR001000 GO:0004553|GO:0005975
Car04g03343 635 SUPERFAMILY Galactose-binding domain-like 100 261 IPR008979 -
Car04g03343 635 SUPERFAMILY (Trans)glycosidases 292 586 IPR017853 -
Car04g03343 635 SMART glyco_10 339 579 IPR001000 GO:0004553|GO:0005975
Car04g03343 635 PRINTS Glycosyl hydrolase family 10 signature 442 453 IPR001000 GO:0004553|GO:0005975
Car04g03343 635 PRINTS Glycosyl hydrolase family 10 signature 370 382 IPR001000 GO:0004553|GO:0005975
Car04g03343 635 PRINTS Glycosyl hydrolase family 10 signature 474 486 IPR001000 GO:0004553|GO:0005975
Car04g03343 635 PANTHER GLYCOSYL HYDROLASE 2 635 IPR044846 GO:0004553|GO:0005975
Car04g03343 635 SUPERFAMILY Galactose-binding domain-like 8 83 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03343 Car-Chr4 61869896 61874100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03343 2 635 Glycoside Hydrolase AT1G58370 72.910 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03343 - - gmx:100818319 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03343 04 61869896 61874100 Car04g03343 04 61869896 61874100 ECH
Car04g03343 04 61869896 61874100 Car05g02820 05 73276914 73280802 PCT