Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03342 ATGGGAAGATCTCCATGTTGTGACAAAGAAAATGTTAAGAGAGGACCATGGTCTCCTGATGAAGATGCAACACTCAAAAGTTATTTAGAGATTCATGGCACTTCTGGAAGTTGGATTGCATTGCCCCAAAAAGCTGGGCTTAAACGGTGTGGCAAGAGTTGCCGTTTACGGTGGTTGAATTATCTTAGGCCAGACATCAGACATGGAGGCTTTACTGAAGAAGAGGACACTATCATTTGCACCCTCTATGCTCAAATGGGTAGCAGATGGTCTGCCATAGCATCAAAACTACCTGGCAGAACAGACAATGATGTGAAAAACTATTGGAACACGAAATTGAAGAAGAAAATTATAGCAGGAAAAGTTACCATCCAACCAATGACTCAAAATGACACTTTTCTCCCTTCAACCCCATCACCAACTCAAAATCCACAATATTTTCCTACTTCACAAACTCAATATTCTCCACCCTCATCACTACCAATTATGCTAGACAATAATAATTATGATGCTAATTATGGATTTAACAATAATGAAAAAATCATGGGTTTTGACCAAATTCATGATCAATTGTATAATCCAAGTGTCAATGATGTTGTTGTCTCACAAATTGGTACAAGTaacaacaacaacaacaaTAGTAATATTAATCCTATGATGTCAATGTCTCAAGATTGTTCAAGCATTGAAGTGAACAACAATTGTGAATTGCTTCAAGATCAAGTAGGTGATCATGAATCTGTGGACCCGTTATTGGATTTTGGATTTGGATTTCCACATGATCATGAAAATGGTCTTAATAACTGCCCTGACAAAGTTGGTGATTTTGGTTCAAGTTTTTGCTTTAGTGAGTGGGTTGATTTTAGTCATGCTGACATTAAGCCATATTGA 891 0.367 MGRSPCCDKENVKRGPWSPDEDATLKSYLEIHGTSGSWIALPQKAGLKRCGKSCRLRWLNYLRPDIRHGGFTEEEDTIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIIAGKVTIQPMTQNDTFLPSTPSPTQNPQYFPTSQTQYSPPSSLPIMLDNNNYDANYGFNNNEKIMGFDQIHDQLYNPSVNDVVVSQIGTSNNNNNNSNINPMMSMSQDCSSIEVNNNCELLQDQVGDHESVDPLLDFGFGFPHDHENGLNNCPDKVGDFGSSFCFSEWVDFSHADIKPY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03342 296 CDD SANT 71 113 IPR001005 -
Car04g03342 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Car04g03342 296 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car04g03342 296 PANTHER OS09G0431300 PROTEIN 1 216 - -
Car04g03342 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car04g03342 296 CDD SANT 16 62 IPR001005 -
Car04g03342 296 Gene3D - 6 68 - -
Car04g03342 296 PANTHER OS09G0431300 PROTEIN 1 216 - -
Car04g03342 296 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Car04g03342 296 SMART sant 67 115 IPR001005 -
Car04g03342 296 SMART sant 13 64 IPR001005 -
Car04g03342 296 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Car04g03342 296 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Car04g03342 296 Gene3D - 70 133 - -
Car04g03342 296 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03342 Car-Chr4 61862091 61865276 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03342 1 118 MYB Transcription Factor Family AT3G49690 77.966 4.12e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g03342 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03342 K09422 - gmx:100789985 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03342 04 61862091 61865276 Car04g03342 04 61862091 61865276 ECH