Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00612 atgaagcCCATGAATGATAGTAACAACGATGGGAATAATCATAACTGGTTGGGGTTCTCTCTTTCACCCCACATGAAAATGGAGGTTAATTCTTCTGGCCCTCAACATCTTCATCATAATAATCACTACCATCATCAACACCAGCCctctgctgctgctgcttcaAGTACTGTTTCTCTTCCAACATCTTTCTATTTGCCCCCTTCTCACCTGAGCACCTCTGGAATTTGTTACGGAGTCGGGGAAAATAGTGCTTTCCATTCTCCCTTGGCTGTAATGCCACTCAAGTCTGATGGCTCTCTTTGTATAATGGAAGCCCTTACTAGATCACAAACGCAAGTTATGGTGCCGACTTCCTCGCCGAAACTGGAGGATTTTCTTGGTGGTGCAACTATGGGAAGCCACGACTATGGTGGCCATGACAGAGAGGCAATGACTCTGAGCTTAGACAGCATCTACTACAGCCAAAATGCAGAGTCTCAAACCAGCAGAGACCATTCTCTGGAACTTCTTTCGGAGCCCTTCAAGCAACACGCTGGGAATATGACAGTTCAACCCCACCTATATTATCCTGGACTTGCATGCCATGGAATTTATCAAGCTCCATTGGAGGAAGATGCCAAGGGCGCCCACGTTACTGTATGTGATTCCCAAATGCCTCGAATGGCGGGAGAAGGCGTTGGCTGCATGAAAAACTGGGTGAATCCCAGGGAGTATTCTATTCCATTCCAGCATCACCAGGCTCTGGTGCAGGAAATGAATGGTAGCATGGGTGATGATCGTGGGGTTTCTGGCCCTGCAGCTACTGCTACTGTTGGCTGTGGGGATTTGCAGTCTTTGAGTTTATCTATGAGCCCTGGTTCTCAGTCTAGTTGTGTCACGGCTTCACGGCAGATCTCACCCACTGCCACCGACTCCGTGGCTGCTATTGAAGGCAAGAAGAGAGGGGCTAGCAAGTTGAGCCAGAAGCAACCCGTGCATAGGAAATCCCTTGACACATTCGGCCAGAGAACGTCGCAGTATAGGGGAGTCACGAGGCACAGATGGACCGGTAGATATGAAGCTCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACCAGGAAAGGAAGACAAGTGTATTTGGGGGGATATGATATGGAAGAGAAAGCTGCAAGATCTTATGATCTAGCTGCCCTCAAGTATTGGGGACCATCAACCCACATAAACTTTCCGTTGGAAAATTACCAGGCTCAActtgaagaaatgaagaacatGAGCAGACAAGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGGTTCTCCAGAGGGGCTTCAATGTTCAGAGGAGTGACAAGGCACCACCAGCATGGAAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAACAAGGACCTTTATCTTGGGACATTCAGCACTCAAGAAGAAGCAGCTGAGGCATATGACATTGCAGCAATCAAATTCCGTGGGGTTAATGCGGTCACTAACTTTGACATATCTAGATATGATGTTGAAAGGATCATTGCTAGCAATACTCTTTTATCTGGGGAGCTGGCAAGGCGAAACAAAGATGGTGAGGCCTTGGAGTATAATGCATCCAGCGCCAGCAATGGGGACACAGTTCAAGGTGAAAACAAGAATGAAAATGGTTCAGATTGGAAGATGGTTTCGTATCAAACTCCACCGCAGCAAGAGTCGAATAGTTCTGAGCAGAAAAACATGGACTGCGGAAATTATAGAAACTCTGCTTTTTCTATGGCCCTACAAGATCTCATTGCGATTGACTCAGTAGGTTCTGGCCAGCTCATGCTAGATGACTCTGCCAAAATAGGGACTCGTTTTTCAAACGCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGGGAAGCCAGCCCTGATAAAACTGGCGCCACATTGCTCTTTCCAAAGCCGCCTCCAATAGCATCGAAGATTGTTAGCCCCATTGCCAGTACTGCTGCGGTTACATCTTGGTTTCCTTCTTCAGCAGCATCTCAGTTGAGGCCAGCTTCAGCTATCTCCATGTCTCACTTGCCTGTTTTTGCTGCTTGGAATGATACCTA 2087 0.4648 MKPMNDSNNDGNNHNWLGFSLSPHMKMEVNSSGPQHLHHNNHYHHQHQPSAAAASSTVSLPTSFYLPPSHLSTSGICYGVGENSAFHSPLAVMPLKSDGSLCIMEALTRSQTQVMVPTSSPKLEDFLGGATMGSHDYGGHDREAMTLSLDSIYYSQNAESQTSRDHSLELLSEPFKQHAGNMTVQPHLYYPGLACHGIYQAPLEEDAKGAHVTVCDSQMPRMAGEGVGCMKNWVNPREYSIPFQHHQALVQEMNGSMGDDRGVSGPAATATVGCGDLQSLSLSMSPGSQSSCVTASRQISPTATDSVAAIEGKKRGASKLSQKQPVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARSYDLAALKYWGPSTHINFPLENYQAQLEEMKNMSRQEYVAHLRRKSSGFSRGASMFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIIASNTLLSGELARRNKDGEALEYNASSASNGDTVQGENKNENGSDWKMVSYQTPPQQESNSSEQKNMDCGNYRNSAFSMALQDLIAIDSVGSGQLMLDDSAKIGTRFSNASSLVTSLSSSREASPDKTGATLLFPKPPPIASKIVSPIASTAAVTSWFPSSAASQLRPASAISMSHLPVFAAWNDT 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00612 695 Pfam AP2 domain 340 398 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 Pfam AP2 domain 443 492 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 Gene3D AP2/ERF domain 339 408 IPR036955 GO:0003700|GO:0006355
Bva10g00612 695 Gene3D AP2/ERF domain 442 502 IPR036955 GO:0003700|GO:0006355
Bva10g00612 695 CDD AP2 441 502 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 CDD AP2 339 406 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 SMART rav1_2 340 412 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 SMART rav1_2 442 506 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 693 - -
Bva10g00612 695 ProSiteProfiles AP2/ERF domain profile. 340 406 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 SUPERFAMILY DNA-binding domain 441 502 IPR016177 GO:0003677
Bva10g00612 695 SUPERFAMILY DNA-binding domain 339 408 IPR016177 GO:0003677
Bva10g00612 695 MobiDBLite consensus disorder prediction 532 575 - -
Bva10g00612 695 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 12 693 - -
Bva10g00612 695 PRINTS Ethylene responsive element binding protein signature 482 502 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 PRINTS Ethylene responsive element binding protein signature 341 352 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 ProSiteProfiles AP2/ERF domain profile. 442 500 IPR001471 GO:0003700|GO:0006355
Bva10g00612 695 MobiDBLite consensus disorder prediction 27 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00612 Bva-Chr10 5417673 5421980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00612 278 560 AP2-EREBP Transcription Factor Family AT4G37750 67.314 3.74e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Bva10g00612 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00612 K09285 - tcc:18591931 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00612 10 5417673 5421980 Bva06g02186 06 14346932 14350983 BWGD
Bva10g00612 10 5417673 5421980 Bva10g00612 10 5417673 5421980 ECH