Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00611 ATGAGTGGTCATGAAAATGTGATGGGTTTTCCACAAGGAAATGATAGCACTCTGAATTGTCCTTCATCGGGTTTAAGCACGAGTGTTTCAGAAATGGCAATTAGTTCCGTGTCTATGGCCAAGCCTGCAGATATAGCTAATCCTTTTCTTGGTTCTTCTACTTGGGATCCACTTGTTTCATTGAATCAGATTCAAACTTTTGGAGGCTCTTCTATGGTTTCTCAAAATGAGTTTGCCAATTCAACTTACCCCCTTCTGTTGGAAAATCAGGGAATGAGTAGCACCTCTCACCTTGTCCAATATATGTCTGATTCAAATTTCGGAGAGATGATCCCTAAGATTCCCTCATTTGAAAGTGGAAACTTCTCCCAAATGATTGGCTCCTTTGGTCAACGTTGTTGTAGTGATTTAGCTAATACGGGGTATCGGCCAAGTTACAGTCCAAACAAGGAGACAGGCATCGAAAGGACTCAAATAAATGGTTCACAGTCCAAGGGTGAGGACTCAACTCCTGAACAAAGAGGCACAGGATCTGTGAGTAATGGAAATAGTAGAAAAAGAGGACTTGATTATGATTCTTCCTTCAGTCCAAATATGAATGCTGAAGAGGAAGCACTGAAGGATTCTTCCGCAAAAACCTCTGAAGTTGTGAAAGAAAAGGACgaaaaaaaaccaaagaatGAACTAAGTTCAAGTGTAGATTTGCGTGGCAAGCAATCAGGAAAGCAAGCTAAAGACAACTCTCAAAGTGGAGAAGCtaccaaagaaaatttcattcatGTGAGAGCTCGAAGAGGTCAAGCTACTAACAGTCATAGCCTAGCAGAAAGGgtaagaagagaaaagatcaGCGAACGGATGAGATTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAGGCGGTAATGCTTGATGAGATTATCAACTATGTACAGTCACTGCAGCAACAAGTTGAGTTCTTGTCAATGAAACTTGCCACTGTGAACCCAGAACTGAATTTTGATGTTGAGAGGATTCTATCCAAGGATATTCTTCAGTCGCGTATTGGAGCTGGACCAGTTATTGGATATGGTGCTGGTATAAATTCTTCTCACCGCTTCCCAAGTGGAAGTTTTCAAGGACCCTTGACAAGCATGCCAAGGACATCCACCTCAATCCCCTCCTTTGCCTCCTCAGATTGTTTTGGACCACGAATTCCCAAGCATCTACGGAATGGGATACGATTCCAGTACAGCTCTCGATA 1253 0.4094 MSGHENVMGFPQGNDSTLNCPSSGLSTSVSEMAISSVSMAKPADIANPFLGSSTWDPLVSLNQIQTFGGSSMVSQNEFANSTYPLLLENQGMSSTSHLVQYMSDSNFGEMIPKIPSFESGNFSQMIGSFGQRCCSDLANTGYRPSYSPNKETGIERTQINGSQSKGEDSTPEQRGTGSVSNGNSRKRGLDYDSSFSPNMNAEEEALKDSSAKTSEVVKEKDEKKPKNELSSSVDLRGKQSGKQAKDNSQSGEATKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIGAGPVIGYGAGINSSHRFPSGSFQGPLTSMPRTSTSIPSFASSDCFGPRIPKHLRNGIRFQYSSR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00611 417 MobiDBLite consensus disorder prediction 205 231 - -
Bva10g00611 417 Pfam Helix-loop-helix DNA-binding domain 270 318 IPR011598 GO:0046983
Bva10g00611 417 MobiDBLite consensus disorder prediction 232 255 - -
Bva10g00611 417 CDD bHLH_AtBPE_like 257 342 - -
Bva10g00611 417 Gene3D - 264 338 IPR036638 GO:0046983
Bva10g00611 417 MobiDBLite consensus disorder prediction 144 256 - -
Bva10g00611 417 MobiDBLite consensus disorder prediction 144 200 - -
Bva10g00611 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 335 IPR036638 GO:0046983
Bva10g00611 417 SMART finulus 273 323 IPR011598 GO:0046983
Bva10g00611 417 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 392 IPR024097 GO:0006355
Bva10g00611 417 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 392 - -
Bva10g00611 417 MobiDBLite consensus disorder prediction 7 22 - -
Bva10g00611 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Bva10g00611 417 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00611 Bva-Chr10 5406473 5409830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00611 8 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.253 1.60e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva10g00611 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00611 - - gmx:100801930 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00611 10 5406473 5409830 Bva10g00611 10 5406473 5409830 ECH