Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00601 ATGGGGAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGGCCATGGTCTCCAGAAGAAGACACCAAGCTCAAATCTTATATCGAGAAACATGGCACTGGTGGCAACTGGATCGCTTTGCCTCAAAAGATCGGCCTGAAAAGGTGTGGAAAGAGTTGTCGTCTTAGGTGGCTGAACTATCTTCGCCCTAATATCAAGCATGGAGGTTTctctgaagaagaagataacaTTATTTGCAGTCTCTACATTAGTATTGGAAGCAGGTGGTCGGTTATCGCAGCCCAATTGCCAGGAAGAACTGATAATGATATCAAGAACTACTGGAACACAAGGCTGAAGAAGAAGCTTTTGGGTAAGCACCGCAAAGAGCAACAGGCACGTAGAGTAGGTAACTCTAGTTCCATTAAGCAGCAGGAAGCGAATAGAGGAAGCTCAGTTTCCATGGTTCCAGATGACAGTTCTCATCAACAGTCATATTGGCCAGAGACACCTGTGCTAACACCTTTGCCATGCTCAAATCAAGGCCCGTGTTTCAACGACCACGATTCTATTAGAAGATTGCTAATCAAGCTTGGAGGGAGATTTTCTGATGATCACTATCAACCCACACCAATCCACGAGGGGTtgaatcttcaattttctgaTGCTACTGCTACTGCCTCCACACAACAGATTTATGAAGAGCAAGCTGGGAATTATATGGgatcttctgcttcttctggCATGAACAATGTTGCAATTAACAAGAATGAAGCACAATTTGCAGAGATCCAGTACTGTGCAGGAGTTGATTTGGTGCAAGGACAAGGCAGTTTCAGCTCAACAATACTTGAGGAAATGATATCTAGTTATCCACAAAAATTAGATGGGCTGGAGTTCTTCTATGGGGAGGACCCCATGGTCAACGATAAGATAGGGTTGATAGGCAGTATTTGTGGGCAAAGTGCGAGCTGGGGTGGCCCCACCTCTCTTGTTTACCCTCCCCATGTTGCTTCCAATTACCAAGGGATGCGGCAAGAGATGCCACAATTTGAAGAGTACTTCAGGTATCCAGGGACGCAATA 1067 0.4349 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARRVGNSSSIKQQEANRGSSVSMVPDDSSHQQSYWPETPVLTPLPCSNQGPCFNDHDSIRRLLIKLGGRFSDDHYQPTPIHEGLNLQFSDATATASTQQIYEEQAGNYMGSSASSGMNNVAINKNEAQFAEIQYCAGVDLVQGQGSFSSTILEEMISSYPQKLDGLEFFYGEDPMVNDKIGLIGSICGQSASWGGPTSLVYPPHVASNYQGMRQEMPQFEEYFRYPGTQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00601 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bva10g00601 355 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva10g00601 355 CDD SANT 71 113 IPR001005 -
Bva10g00601 355 Gene3D - 70 144 - -
Bva10g00601 355 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bva10g00601 355 MobiDBLite consensus disorder prediction 119 162 - -
Bva10g00601 355 CDD SANT 16 62 IPR001005 -
Bva10g00601 355 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 345 - -
Bva10g00601 355 SMART sant 67 115 IPR001005 -
Bva10g00601 355 SMART sant 13 64 IPR001005 -
Bva10g00601 355 PANTHER OS09G0431300 PROTEIN 1 345 - -
Bva10g00601 355 MobiDBLite consensus disorder prediction 129 162 - -
Bva10g00601 355 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva10g00601 355 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva10g00601 355 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva10g00601 355 Gene3D - 7 68 - -
Bva10g00601 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00601 Bva-Chr10 5345411 5346739 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00601 1 246 MYB Transcription Factor Family AT3G49690 56.349 2.23e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva10g00601 Myb_DNA-binding 8.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00601 K09422 - gmx:778079 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00601 10 5345411 5346739 Bva06g02198 06 14411882 14413648 BWGD
Bva10g00601 10 5345411 5346739 Bva10g00601 10 5345411 5346739 ECH