Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00599 atgGAGGAATATAGTAATCACCTGAGTGAAAACGGAGCTCCAAGGTCAAATTTCTTGTACTCTTCGCCTGCTCTTGGTTTCGGGAGAACCATCAGTGATGGTTCTCATCACCAGCTGTCTGTCAACACCTTTCATCTTCAATCGGGTGGATCAGAATGTTTTCAGTCCGATCAATCTCATCCAACGGTCAAGACCGAAGCCAATACCTCGCAGCCAACTCAGATTTTTCACTATCCCCTAATGAGAGGTAATCTTCACCACGCGATGCAGCATCAGCAGCACCACCAAGGAGGTAGCCAAAGCTCCAACGAATTCGAAGCCATTAAAGCTAAAATCATTGCTCATCCTCAGTACTCCAACCTTCTAGAAGCTTACATGGATTGCCAAAAGGTCGGAGCACCACCGGAGGTGGTGGCGCGTCTAGCTGCGGTTCGGCAGGAGTTTGAGGCACGGCAGCGCTCTTCCATTGGCTCGAGGGAAACTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATCGAGAGGAACTGACAAGGCCTATACAAGAGGCAATGGATTTCATGCGAAGAATAGAAACTCAGCTAAATACGCTTTGCAATGGACCCGTCCGGATCTTTTCTGATGACAAGTGTGAAGGCGTTGGCTCATCTGAAGAGGATCAAGACAATAGTGGTGGAGAAGCAGAACTGCCGGAGATTGATCCCCGAGCTGAAGACCGTGAACTTAAAAACCACTTGTTGAGGAAGTATAGTGGTTACTTAAGTAGCCTTAAGCAAGaactttcaaagaaaaagaagaagggaaaATTGCCTAAAGATGCAAGGCAAAAACTACTTAACTGGTGGGAACTACATTACAAATGGCCATATCCTTCGGAATCGGAGAAAGTGGCATTGGCTGAATCAACTGGTTTGGACcagaagcaaataaataactgGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGACATGCAATTCATGGTGATGGATGGCCTGCATCCACAGAACGCATCTCTCTATATGGACGGTCACTACATGGCGGACGGTCACTACCGTCTAGGGCCATG 1103 0.4515 MEEYSNHLSENGAPRSNFLYSSPALGFGRTISDGSHHQLSVNTFHLQSGGSECFQSDQSHPTVKTEANTSQPTQIFHYPLMRGNLHHAMQHQQHHQGGSQSSNEFEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLAAVRQEFEARQRSSIGSRETCKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPVRIFSDDKCEGVGSSEEDQDNSGGEAELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNASLYMDGHYMADGHYRLGP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00599 367 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Bva10g00599 367 Gene3D - 274 336 - -
Bva10g00599 367 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Bva10g00599 367 SMART ELK_2 249 270 IPR005539 GO:0003677
Bva10g00599 367 ProSitePatterns 'Homeobox' domain signature. 307 330 IPR017970 GO:0000981|GO:0006355
Bva10g00599 367 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 359 - -
Bva10g00599 367 Pfam KNOX1 domain 107 149 IPR005540 GO:0003677|GO:0005634
Bva10g00599 367 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 359 - -
Bva10g00599 367 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Bva10g00599 367 Pfam KNOX2 domain 161 207 IPR005541 GO:0003677|GO:0005634
Bva10g00599 367 CDD homeodomain 281 333 IPR001356 GO:0003677
Bva10g00599 367 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
Bva10g00599 367 SUPERFAMILY Homeodomain-like 270 344 IPR009057 -
Bva10g00599 367 SMART HOX_1 271 336 IPR001356 GO:0003677
Bva10g00599 367 MobiDBLite consensus disorder prediction 218 245 - -
Bva10g00599 367 Pfam ELK domain 249 270 IPR005539 GO:0003677
Bva10g00599 367 ProSiteProfiles ELK domain profile. 249 269 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00599 Bva-Chr10 5327324 5331656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00599 53 367 Homeobox Transcription Factor Family AT4G08150 69.632 1.92e-152 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva10g00599 KNOX2 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00599 - - gmx:100807602 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00599 10 5327324 5331656 Bva10g00599 10 5327324 5331656 ECH