Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00596 ATGGGAAGAGCTCCTTGCTGCGACAAAGCAAATGTCAACAGAGGGCCATGGTTTCCTGAAGAAGACGCAGCTCTCAAGAGTTATATAGAAGCTCATGGCACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGGCGTTGTGGCAAGAGTTGCCGTCTACGATGGCTCAATTATCTTAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAGGAGGACAACATCATTTGCACCCTCTATGGCCAAATGGGAAGCAGATGGTCTGCTATAGCTTCTCAGCTCTCTGGAAGAACAGACAACGAAGTAAAGAATTACTGGAATACTAAATTAAAGAAGAAGCTAAAGGCGGGACAAGTGAGCCTCAACACAACGATTGACGCTGTCACTGCTGCTACAACCCCATTGCTAATCCAAACTGCTGAAACTCAAAATTcagagttttcttcttctcaaaaTCAGAGTTTTTCATCCTCGTCCTTGTCAATCCTAACCGATTCTAATTTTGGGTTTAACATTAACCCTCAGACCATCAGTTTTGGCCCAGTTCAATTGTATAGCCAGGGGTTCGTGGACATATCAGAAACAGGTGCAAATTCAAAAAACAGTCGCACATTGTCGTTGTCTCGAGAAGGCTCAAGTATTTCAGATTCGTCGCCAATTGCACTGGAAAGCAAGAGTCTAACACTGACTGAACAAGGCAGTGATGAAACTTTGATGGATTTTGACTTTGGATTCCACTGGGACTTTGTCAATGGTCTTTACTATCAAGAGAAAGCTGGTGAATTAGCTCCAGATTGCTATCCTAATCAGCTGGTTGATTTTACCTATGCCGACATTAAGCCGTA 854 0.4286 MGRAPCCDKANVNRGPWFPEEDAALKSYIEAHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYGQMGSRWSAIASQLSGRTDNEVKNYWNTKLKKKLKAGQVSLNTTIDAVTAATTPLLIQTAETQNSEFSSSQNQSFSSSSLSILTDSNFGFNINPQTISFGPVQLYSQGFVDISETGANSKNSRTLSLSREGSSISDSSPIALESKSLTLTEQGSDETLMDFDFGFHWDFVNGLYYQEKAGELAPDCYPNQLVDFTYADIKP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00596 284 CDD SANT 71 113 IPR001005 -
Bva10g00596 284 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva10g00596 284 PANTHER OS09G0431300 PROTEIN 1 185 - -
Bva10g00596 284 Gene3D - 7 68 - -
Bva10g00596 284 CDD SANT 16 62 IPR001005 -
Bva10g00596 284 Gene3D - 70 131 - -
Bva10g00596 284 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bva10g00596 284 SMART sant 67 115 IPR001005 -
Bva10g00596 284 SMART sant 13 64 IPR001005 -
Bva10g00596 284 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva10g00596 284 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva10g00596 284 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva10g00596 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva10g00596 284 PANTHER OS09G0431300 PROTEIN 1 185 - -
Bva10g00596 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00596 Bva-Chr10 5301460 5303175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00596 1 117 MYB Transcription Factor Family AT3G49690 81.197 4.35e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva10g00596 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00596 K09422 - tcc:18588021 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00596 10 5301460 5303175 Bva10g00596 10 5301460 5303175 ECH
Bva10g00596 10 5301460 5303175 Bva06g02206 06 14470734 14472449 ECH