Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01181 ATGGGAAACTTCTTCTCTAAAAAGCGTCAATTTTCCAGAGATGTTAAAGAGAGCGATAGCGTCGCAAGAAGAGCCTCCTCCAACGTAATCAGGAGAACGGTGTCGAATTCTCGGTCAACGGCAGCGCTGCcaccgccgccgccgccgcctcAGACTCTGCATCTGCCTCGGCCGGCGCAACCAATGTCAACGTCAGGCCTCAAGCACATCACGGAGAGGAAGTTATCTGCTAAGAAGAAATATGCTCTGATTCCAGATCAATTCTCTTCCCTCGACCAGgTTACTGCAGCGTTGAGGAAAGAAGGCTTAGAATCATCCAATCTGATTGTTGGTATTGATTTCACAAAGAGCAATGAATGGACTGGCAAAATCTCATTCAACAAGCGAAGCCTGCACGCCATTGGCGATGTTCCCAACCCCTATGAGAAGGCCCTCTCCATCATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTAATTCCTTGCTTTGGATTTGGTGATGCTACAACACATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCTCCCTGCCATGGCTTTGAGGAAGTTCTGGCTTGCTACCAAAAGATAGTTCCAAACTTGAAACTTTCAGGTCCAACGTCGTATGCTCCGGTTGTCGAGGCTGCGATCGACATAGTTGAGAAACATCGTGGCCAATTCCATGTCTTGCTTATCATTGCAGATGGCCAGGTTACAAGAAGTGTCAACACTGATGATGGAGAACTCAGTCCTCAAGAACAGAAAACTATACAAGCAATTGTTGAAGCAAGTTCGTACCCACTTTCGATTGTTCTTGTTGGAGTTGGTGATGGACCTTGGGATGACATGAGAAAGTTTGATGACAAGTTACCGGCACGTGATTTCGACAACTTCCAGTTTGTAAACTTCACTGAGATCATGTCTAGAGATACAAGCCCTGCCCAGAAAGAAGCTGCTTTTGCTCTGGCTGCTCTCATGGAGATTCCATTCCAATATAAAGCAGCAGTTGAACTTGGACTACTTGGACACATAACGGGGCGGGCGAAGAAAATAGTTCCAAAGCCTCCTCCAGTTCCATATTCTAGGCTTGTTCCACCTGCTCGTGCACTAAGCAATAATATGTCAGCATCTGcggatgatgatgaaagaaccCAAATGgtTTGTCCAATTTGTCTGACCAATGCAAAGGACTTAGCTTTTCAATGTGGGCACATGACTTGTAGGGATTGTGGATCAAGGATAACAAACTGCCCCATATGCAGAGAGAGGATCACGAGTCGTCTGAGAGTGTTCACTGGCTA 1307 0.4415 MGNFFSKKRQFSRDVKESDSVARRASSNVIRRTVSNSRSTAALPPPPPPPQTLHLPRPAQPMSTSGLKHITERKLSAKKKYALIPDQFSSLDQVTAALRKEGLESSNLIVGIDFTKSNEWTGKISFNKRSLHAIGDVPNPYEKALSIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVVEAAIDIVEKHRGQFHVLLIIADGQVTRSVNTDDGELSPQEQKTIQAIVEASSYPLSIVLVGVGDGPWDDMRKFDDKLPARDFDNFQFVNFTEIMSRDTSPAQKEAAFALAALMEIPFQYKAAVELGLLGHITGRAKKIVPKPPPVPYSRLVPPARALSNNMSASADDDERTQMVCPICLTNAKDLAFQCGHMTCRDCGSRITNCPICRERITSRLRVFTG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01181 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 28 433 - -
Bva09g01181 435 MobiDBLite consensus disorder prediction 22 40 - -
Bva09g01181 435 CDD RING-HC_RGLG_plant 389 433 IPR045317 GO:0061630|GO:0070534
Bva09g01181 435 MobiDBLite consensus disorder prediction 41 56 - -
Bva09g01181 435 Pfam Zinc finger, C3HC4 type (RING finger) 388 428 - -
Bva09g01181 435 PANTHER COPINE FAMILY PROTEIN 1 28 433 - -
Bva09g01181 435 Pfam Copine 130 343 IPR010734 -
Bva09g01181 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 434 IPR013083 -
Bva09g01181 435 SUPERFAMILY vWA-like 107 289 IPR036465 -
Bva09g01181 435 SMART ring_2 390 422 IPR001841 -
Bva09g01181 435 MobiDBLite consensus disorder prediction 1 68 - -
Bva09g01181 435 SUPERFAMILY RING/U-box 383 429 - -
Bva09g01181 435 SMART VWA_4 105 308 IPR002035 -
Bva09g01181 435 ProSiteProfiles Zinc finger RING-type profile. 390 423 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01181 Bva-Chr9 6311118 6324502 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01181 K16280 - gmx:100795579 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01181 09 6311118 6324502 Bva09g01181 09 6311118 6324502 ECH